/gscratch/scrubbed/sr320/0924/EPI-161_S8_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-161_S8_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
24492789
Paired-end alignments with a unique best hit
8347099
Pairs without alignments under any condition
13726258
Pairs that did not map uniquely
2419432
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
193695409
Methylated C's in CpG context
6288786
Methylated C's in CHG context
569736
Methylated C's in CHH context
2419489
Methylated C's in Unknown context
28456
Unmethylated C's in CpG context
19259401
Unmethylated C's in CHG context
39712890
Unmethylated C's in CHH context
125445107
Unmethylated C's in Unknown context
389018
Percentage methylation (CpG context)
24.6%
Percentage methylation (CHG context)
1.4%
Percentage methylation (CHH context)
1.9%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4106177
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4240922
original bottom strand
Deduplication
Alignments analysed
8347099
Unique alignments
6156942
Duplicates removed
2190157
Duplicated alignments were found at 1384516 different positions
