CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 53954 139000 27.96 192954 2 52913 138116 27.70 191029 3 52916 137793 27.75 190709 4 52030 138195 27.35 190225 5 52225 136975 27.60 189200 6 51635 135334 27.62 186969 7 51560 138951 27.06 190511 8 53185 137967 27.82 191152 9 51598 140626 26.84 192224 10 51120 139469 26.82 190589 11 52397 135728 27.85 188125 12 51089 133536 27.67 184625 13 51528 132709 27.97 184237 14 52276 132510 28.29 184786 15 51253 131682 28.02 182935 16 50706 133240 27.57 183946 17 49953 131959 27.46 181912 18 49831 131275 27.51 181106 19 51638 133746 27.85 185384 20 51476 132507 27.98 183983 21 51998 132333 28.21 184331 22 53131 134725 28.28 187856 23 51786 132427 28.11 184213 24 51485 130613 28.27 182098 25 51860 130989 28.36 182849 26 52453 131768 28.47 184221 27 50845 127402 28.53 178247 28 50912 128712 28.34 179624 29 51873 129590 28.59 181463 30 51047 129894 28.21 180941 31 50328 128612 28.13 178940 32 51265 131904 27.99 183169 33 49391 126295 28.11 175686 34 48865 124595 28.17 173460 35 48298 121627 28.42 169925 36 47318 120549 28.19 167867 37 47960 121103 28.37 169063 38 47445 120985 28.17 168430 39 47546 119374 28.48 166920 40 46265 119180 27.96 165445 41 46556 116526 28.55 163082 42 46144 117825 28.14 163969 43 45097 115948 28.00 161045 44 44402 115682 27.74 160084 45 44769 113664 28.26 158433 46 45199 114173 28.36 159372 47 44086 110890 28.45 154976 48 43000 111258 27.88 154258 49 43277 110357 28.17 153634 50 42282 109817 27.80 152099 51 41818 107514 28.00 149332 52 40850 106864 27.65 147714 53 40964 104849 28.09 145813 54 40245 104156 27.87 144401 55 39198 103847 27.40 143045 56 39043 101955 27.69 140998 57 39060 100542 27.98 139602 58 39185 100343 28.08 139528 59 38421 98966 27.97 137387 60 37413 99157 27.39 136570 61 37278 98059 27.54 135337 62 36408 96043 27.49 132451 63 36502 96219 27.50 132721 64 35912 96180 27.19 132092 65 36251 94406 27.75 130657 66 34707 92610 27.26 127317 67 33962 91493 27.07 125455 68 34049 91359 27.15 125408 69 33328 89705 27.09 123033 70 33383 89703 27.12 123086 71 32873 87761 27.25 120634 72 32503 87557 27.07 120060 73 32097 87715 26.79 119812 74 31949 86052 27.08 118001 75 31469 85516 26.90 116985 76 31262 85280 26.82 116542 77 30332 82286 26.93 112618 78 28158 76999 26.78 105157 79 22476 60539 27.07 83015 80 28808 76655 27.32 105463 81 26104 75617 25.66 101721 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2907 292269 0.98 295176 2 3219 289959 1.10 293178 3 3021 294579 1.02 297600 4 2693 296800 0.90 299493 5 2800 289441 0.96 292241 6 3260 292014 1.10 295274 7 3043 297056 1.01 300099 8 3070 293493 1.04 296563 9 3355 296906 1.12 300261 10 3061 300600 1.01 303661 11 3254 291540 1.10 294794 12 3031 295893 1.01 298924 13 2946 296001 0.99 298947 14 2910 291686 0.99 294596 15 2993 292017 1.01 295010 16 2792 295511 0.94 298303 17 2836 287970 0.98 290806 18 3013 293425 1.02 296438 19 3026 291997 1.03 295023 20 3035 290339 1.03 293374 21 3202 290879 1.09 294081 22 3187 291778 1.08 294965 23 3199 285845 1.11 289044 24 3173 288029 1.09 291202 25 3418 288019 1.17 291437 26 3340 283472 1.16 286812 27 3426 283947 1.19 287373 28 3406 287859 1.17 291265 29 3374 280637 1.19 284011 30 3564 279292 1.26 282856 31 3451 282470 1.21 285921 32 3421 279230 1.21 282651 33 3528 275623 1.26 279151 34 3572 278893 1.26 282465 35 3460 271657 1.26 275117 36 3614 273322 1.30 276936 37 3516 271239 1.28 274755 38 3486 267967 1.28 271453 39 3552 268111 1.31 271663 40 3451 267172 1.28 270623 41 3402 263698 1.27 267100 42 3549 262627 1.33 266176 43 3564 260509 1.35 264073 44 3586 259131 1.36 262717 45 3753 256878 1.44 260631 46 3367 252344 1.32 255711 47 3395 245570 1.36 248965 48 3675 247559 1.46 251234 49 3491 245144 1.40 248635 50 3327 239886 1.37 243213 51 3393 239005 1.40 242398 52 3165 237755 1.31 240920 53 3214 233905 1.36 237119 54 3327 230752 1.42 234079 55 3248 231203 1.39 234451 56 3083 224676 1.35 227759 57 3179 224792 1.39 227971 58 3109 222131 1.38 225240 59 3132 217771 1.42 220903 60 3106 217084 1.41 220190 61 3095 214671 1.42 217766 62 3119 210228 1.46 213347 63 3185 212819 1.47 216004 64 3135 212048 1.46 215183 65 3216 207476 1.53 210692 66 3073 207351 1.46 210424 67 3056 207730 1.45 210786 68 3150 202173 1.53 205323 69 3047 200320 1.50 203367 70 3019 198261 1.50 201280 71 2999 194956 1.51 197955 72 3000 195780 1.51 198780 73 3176 192576 1.62 195752 74 3012 188755 1.57 191767 75 3018 186175 1.60 189193 76 3058 185598 1.62 188656 77 2835 168527 1.65 171362 78 2555 154465 1.63 157020 79 1671 99523 1.65 101194 80 1920 101376 1.86 103296 81 3962 167537 2.31 171499 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 14844 946357 1.54 961201 2 16045 949576 1.66 965621 3 17623 949830 1.82 967453 4 14632 951267 1.51 965899 5 15638 957222 1.61 972860 6 17645 961877 1.80 979522 7 14936 965705 1.52 980641 8 15152 968104 1.54 983256 9 18241 966791 1.85 985032 10 15471 961033 1.58 976504 11 16072 946832 1.67 962904 12 17608 952494 1.82 970102 13 15389 950830 1.59 966219 14 16778 959145 1.72 975923 15 17649 949121 1.83 966770 16 14793 957875 1.52 972668 17 15162 948613 1.57 963775 18 17184 949811 1.78 966995 19 14380 942881 1.50 957261 20 15012 941048 1.57 956060 21 17375 943576 1.81 960951 22 15267 946875 1.59 962142 23 15803 933080 1.67 948883 24 17017 934884 1.79 951901 25 15199 924921 1.62 940120 26 15037 923175 1.60 938212 27 16650 915946 1.79 932596 28 14407 914152 1.55 928559 29 14636 901208 1.60 915844 30 16561 894183 1.82 910744 31 14018 885729 1.56 899747 32 15181 879033 1.70 894214 33 16611 868775 1.88 885386 34 14466 866777 1.64 881243 35 14692 858811 1.68 873503 36 16284 855702 1.87 871986 37 13832 859545 1.58 873377 38 14457 850748 1.67 865205 39 16387 851622 1.89 868009 40 13656 839669 1.60 853325 41 14590 832604 1.72 847194 42 15784 821065 1.89 836849 43 13814 814758 1.67 828572 44 14467 804599 1.77 819066 45 15647 799191 1.92 814838 46 13366 791518 1.66 804884 47 13536 784734 1.70 798270 48 14939 780910 1.88 795849 49 12977 773199 1.65 786176 50 13107 766130 1.68 779237 51 14691 760721 1.89 775412 52 12918 754237 1.68 767155 53 13762 741264 1.82 755026 54 14302 739532 1.90 753834 55 12422 732804 1.67 745226 56 12608 727939 1.70 740547 57 14224 718344 1.94 732568 58 11930 713138 1.65 725068 59 12298 708269 1.71 720567 60 13612 700331 1.91 713943 61 12165 690025 1.73 702190 62 12545 680568 1.81 693113 63 13558 677561 1.96 691119 64 11744 668863 1.73 680607 65 12223 657736 1.82 669959 66 12934 652602 1.94 665536 67 11427 647190 1.73 658617 68 11577 639764 1.78 651341 69 12702 631183 1.97 643885 70 10841 627781 1.70 638622 71 11219 619290 1.78 630509 72 11928 613411 1.91 625339 73 10521 609065 1.70 619586 74 10924 598671 1.79 609595 75 11775 589842 1.96 601617 76 9929 579077 1.69 589006 77 9877 561410 1.73 571287 78 10559 520500 1.99 531059 79 6182 360294 1.69 366476 80 6921 321486 2.11 328407 81 10919 524467 2.04 535386 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21571 66391 24.52 87962 2 22283 67881 24.71 90164 3 21362 65796 24.51 87158 4 19826 62121 24.19 81947 5 21777 65804 24.86 87581 6 20452 62105 24.77 82557 7 21830 63023 25.73 84853 8 20211 61006 24.89 81217 9 21055 62524 25.19 83579 10 20159 58870 25.51 79029 11 19491 58966 24.84 78457 12 18751 54740 25.51 73491 13 21182 56035 27.43 77217 14 20121 57228 26.01 77349 15 24082 60471 28.48 84553 16 19968 53359 27.23 73327 17 20389 54519 27.22 74908 18 18358 51355 26.33 69713 19 18368 50543 26.65 68911 20 20364 50864 28.59 71228 21 18031 50260 26.40 68291 22 18472 51252 26.49 69724 23 18166 49494 26.85 67660 24 17162 48122 26.29 65284 25 20986 53119 28.32 74105 26 16653 44593 27.19 61246 27 16814 45274 27.08 62088 28 16781 46095 26.69 62876 29 16400 45933 26.31 62333 30 15755 43639 26.53 59394 31 15575 42552 26.79 58127 32 15111 42959 26.02 58070 33 15906 42206 27.37 58112 34 15655 41980 27.16 57635 35 15963 41884 27.60 57847 36 14516 40655 26.31 55171 37 15198 41057 27.02 56255 38 14906 39871 27.21 54777 39 14244 38054 27.24 52298 40 14523 38588 27.34 53111 41 13153 37300 26.07 50453 42 13032 36778 26.16 49810 43 14325 36377 28.25 50702 44 13267 35448 27.23 48715 45 12958 33624 27.82 46582 46 13635 35323 27.85 48958 47 12630 36008 25.97 48638 48 14114 36647 27.80 50761 49 12334 32838 27.30 45172 50 11934 33014 26.55 44948 51 12525 31992 28.14 44517 52 11593 31242 27.06 42835 53 11947 31499 27.50 43446 54 10341 30356 25.41 40697 55 10753 30135 26.30 40888 56 11129 29420 27.45 40549 57 10569 29179 26.59 39748 58 10764 29270 26.89 40034 59 10439 28653 26.70 39092 60 10156 28080 26.56 38236 61 10126 27827 26.68 37953 62 10094 27667 26.73 37761 63 10112 27020 27.23 37132 64 11465 29449 28.02 40914 65 9686 26637 26.67 36323 66 9741 26425 26.93 36166 67 9576 25404 27.38 34980 68 9379 25253 27.08 34632 69 10205 25724 28.40 35929 70 10061 25358 28.41 35419 71 9047 25024 26.55 34071 72 8682 24372 26.27 33054 73 8950 24139 27.05 33089 74 9176 24260 27.44 33436 75 8979 23853 27.35 32832 76 8817 23560 27.23 32377 77 9643 24773 28.02 34416 78 8483 21715 28.09 30198 79 7518 0 100.00 7518 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1922 138262 1.37 140184 2 1578 149673 1.04 151251 3 1372 151993 0.89 153365 4 1285 135090 0.94 136375 5 1391 136916 1.01 138307 6 1537 143787 1.06 145324 7 1603 133857 1.18 135460 8 1815 129382 1.38 131197 9 2220 135734 1.61 137954 10 2318 131289 1.73 133607 11 2350 126583 1.82 128933 12 2179 127590 1.68 129769 13 2287 146788 1.53 149075 14 2071 122464 1.66 124535 15 1733 126379 1.35 128112 16 1478 126389 1.16 127867 17 1224 115710 1.05 116934 18 1281 121961 1.04 123242 19 1155 112601 1.02 113756 20 1114 110988 0.99 112102 21 1060 109365 0.96 110425 22 1081 103327 1.04 104408 23 955 106152 0.89 107107 24 1002 105119 0.94 106121 25 952 99942 0.94 100894 26 983 99292 0.98 100275 27 965 102185 0.94 103150 28 1018 97628 1.03 98646 29 970 101454 0.95 102424 30 1022 97450 1.04 98472 31 930 91950 1.00 92880 32 911 89929 1.00 90840 33 977 100219 0.97 101196 34 934 91621 1.01 92555 35 910 90209 1.00 91119 36 951 90621 1.04 91572 37 994 86580 1.14 87574 38 882 84478 1.03 85360 39 865 87001 0.98 87866 40 986 84562 1.15 85548 41 836 84308 0.98 85144 42 827 86065 0.95 86892 43 904 83938 1.07 84842 44 742 78350 0.94 79092 45 841 80616 1.03 81457 46 801 75758 1.05 76559 47 835 81511 1.01 82346 48 762 78111 0.97 78873 49 763 77595 0.97 78358 50 805 76817 1.04 77622 51 816 78182 1.03 78998 52 724 72974 0.98 73698 53 716 70864 1.00 71580 54 693 74513 0.92 75206 55 666 70735 0.93 71401 56 639 68296 0.93 68935 57 669 71010 0.93 71679 58 673 65885 1.01 66558 59 623 66595 0.93 67218 60 637 64961 0.97 65598 61 616 63453 0.96 64069 62 634 61938 1.01 62572 63 635 63263 0.99 63898 64 526 60256 0.87 60782 65 652 66601 0.97 67253 66 618 60222 1.02 60840 67 579 59795 0.96 60374 68 558 56583 0.98 57141 69 607 59575 1.01 60182 70 653 58144 1.11 58797 71 621 61391 1.00 62012 72 584 57534 1.00 58118 73 551 54997 0.99 55548 74 510 53877 0.94 54387 75 570 55556 1.02 56126 76 522 52610 0.98 53132 77 567 52685 1.06 53252 78 463 52236 0.88 52699 79 324 0 100.00 324 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8069 497595 1.60 505664 2 7797 480298 1.60 488095 3 7520 470710 1.57 478230 4 7188 453836 1.56 461024 5 7462 448277 1.64 455739 6 7228 445932 1.60 453160 7 7743 474023 1.61 481766 8 7682 447538 1.69 455220 9 7860 438169 1.76 446029 10 8114 424262 1.88 432376 11 8001 416049 1.89 424050 12 8005 403113 1.95 411118 13 7904 397886 1.95 405790 14 7933 393602 1.98 401535 15 7757 403702 1.89 411459 16 6776 397910 1.67 404686 17 6695 393700 1.67 400395 18 6591 411912 1.57 418503 19 6312 377246 1.65 383558 20 6283 393368 1.57 399651 21 6046 370469 1.61 376515 22 5927 376031 1.55 381958 23 5680 359161 1.56 364841 24 5621 354372 1.56 359993 25 5672 354388 1.58 360060 26 5333 357932 1.47 363265 27 5311 348567 1.50 353878 28 5368 343269 1.54 348637 29 5180 347510 1.47 352690 30 5151 338949 1.50 344100 31 5168 330006 1.54 335174 32 4874 315835 1.52 320709 33 4739 315125 1.48 319864 34 4550 309036 1.45 313586 35 4660 319822 1.44 324482 36 4590 307489 1.47 312079 37 4470 315247 1.40 319717 38 4407 303041 1.43 307448 39 4475 290163 1.52 294638 40 4450 300793 1.46 305243 41 4198 286258 1.45 290456 42 4184 284180 1.45 288364 43 4008 286886 1.38 290894 44 4141 275511 1.48 279652 45 4083 280375 1.44 284458 46 3878 269261 1.42 273139 47 3819 270192 1.39 274011 48 3956 278270 1.40 282226 49 3928 268515 1.44 272443 50 3620 257874 1.38 261494 51 3716 255531 1.43 259247 52 3725 253773 1.45 257498 53 3577 250920 1.41 254497 54 3478 250295 1.37 253773 55 3466 249740 1.37 253206 56 3379 239639 1.39 243018 57 3456 237513 1.43 240969 58 3526 238221 1.46 241747 59 3477 242175 1.42 245652 60 3373 232009 1.43 235382 61 3477 232723 1.47 236200 62 3199 228956 1.38 232155 63 3273 227002 1.42 230275 64 3208 224410 1.41 227618 65 3056 220954 1.36 224010 66 3037 218274 1.37 221311 67 3071 217522 1.39 220593 68 2813 210677 1.32 213490 69 2991 209107 1.41 212098 70 2825 207161 1.35 209986 71 2863 206283 1.37 209146 72 2809 203715 1.36 206524 73 2750 201551 1.35 204301 74 2730 198744 1.36 201474 75 2667 195160 1.35 197827 76 2612 190773 1.35 193385 77 2514 191594 1.30 194108 78 2187 181820 1.19 184007 79 1546 0 100.00 1546