/gscratch/scrubbed/sr320/0924/EPI-160_S7_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-160_S7_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
31886930
Paired-end alignments with a unique best hit
11802275
Pairs without alignments under any condition
16439992
Pairs that did not map uniquely
3644663
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
272689183
Methylated C's in CpG context
9254013
Methylated C's in CHG context
844540
Methylated C's in CHH context
2942224
Methylated C's in Unknown context
36933
Unmethylated C's in CpG context
27616194
Unmethylated C's in CHG context
56966486
Unmethylated C's in CHH context
175065726
Unmethylated C's in Unknown context
560307
Percentage methylation (CpG context)
25.1%
Percentage methylation (CHG context)
1.5%
Percentage methylation (CHH context)
1.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5797783
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
6004491
original bottom strand
Deduplication
Alignments analysed
11802274
Unique alignments
8697606
Duplicates removed
3104668
Duplicated alignments were found at 1816178 different positions