CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 29189 71452 29.00 100641 2 29073 69927 29.37 99000 3 29169 70407 29.29 99576 4 28408 69546 29.00 97954 5 27804 69366 28.61 97170 6 28175 68645 29.10 96820 7 28300 70863 28.54 99163 8 28873 70081 29.18 98954 9 28131 72687 27.90 100818 10 27625 71185 27.96 98810 11 28368 69752 28.91 98120 12 27569 67766 28.92 95335 13 27929 68544 28.95 96473 14 28138 67778 29.34 95916 15 28114 67189 29.50 95303 16 27499 68254 28.72 95753 17 27181 67321 28.76 94502 18 26772 67149 28.50 93921 19 27998 69147 28.82 97145 20 27886 67528 29.23 95414 21 27820 67826 29.09 95646 22 28439 69061 29.17 97500 23 28022 67949 29.20 95971 24 27587 67438 29.03 95025 25 28031 67065 29.48 95096 26 27989 68280 29.07 96269 27 27611 66621 29.30 94232 28 27424 66583 29.17 94007 29 28473 66764 29.90 95237 30 27484 68277 28.70 95761 31 27662 67326 29.12 94988 32 27915 70053 28.49 97968 33 27046 66252 28.99 93298 34 26493 65617 28.76 92110 35 26593 63945 29.37 90538 36 26324 63344 29.36 89668 37 26141 64174 28.94 90315 38 26271 63736 29.19 90007 39 26747 63212 29.73 89959 40 25970 63233 29.11 89203 41 25819 62729 29.16 88548 42 25164 63154 28.49 88318 43 25215 62029 28.90 87244 44 24944 62218 28.62 87162 45 24978 60878 29.09 85856 46 25197 61600 29.03 86797 47 25020 59941 29.45 84961 48 24514 60651 28.78 85165 49 24589 59704 29.17 84293 50 24077 59526 28.80 83603 51 23656 58513 28.79 82169 52 23451 58531 28.61 81982 53 23269 56982 29.00 80251 54 23231 57080 28.93 80311 55 22716 56489 28.68 79205 56 22636 56309 28.67 78945 57 22727 55613 29.01 78340 58 22826 55798 29.03 78624 59 22407 54717 29.05 77124 60 22055 54705 28.73 76760 61 21945 54146 28.84 76091 62 21273 53882 28.31 75155 63 21868 54278 28.72 76146 64 21328 53540 28.49 74868 65 21223 53156 28.53 74379 66 20787 52211 28.48 72998 67 20527 51997 28.30 72524 68 20207 51836 28.05 72043 69 20035 51269 28.10 71304 70 20118 51014 28.28 71132 71 19640 50115 28.16 69755 72 19653 49720 28.33 69373 73 19262 49888 27.86 69150 74 19335 49148 28.23 68483 75 18891 48789 27.91 67680 76 19100 49251 27.94 68351 77 18256 47551 27.74 65807 78 17176 44348 27.92 61524 79 13637 34907 28.09 48544 80 17589 44183 28.47 61772 81 16238 43851 27.02 60089 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 1818 152460 1.18 154278 2 2026 151071 1.32 153097 3 1749 152508 1.13 154257 4 1763 153509 1.14 155272 5 1714 149332 1.13 151046 6 2402 151303 1.56 153705 7 1762 153023 1.14 154785 8 1798 151513 1.17 153311 9 2204 153731 1.41 155935 10 1716 155240 1.09 156956 11 1681 151752 1.10 153433 12 1615 153413 1.04 155028 13 1738 153547 1.12 155285 14 1690 152086 1.10 153776 15 1944 152324 1.26 154268 16 1593 153506 1.03 155099 17 1684 150031 1.11 151715 18 2090 151947 1.36 154037 19 1615 152498 1.05 154113 20 1563 151197 1.02 152760 21 1663 151898 1.08 153561 22 1782 151652 1.16 153434 23 1702 149771 1.12 151473 24 1821 152132 1.18 153953 25 1782 151028 1.17 152810 26 1839 149202 1.22 151041 27 1858 149043 1.23 150901 28 1762 152173 1.14 153935 29 1680 148913 1.12 150593 30 1893 148833 1.26 150726 31 1709 150292 1.12 152001 32 1816 148937 1.20 150753 33 1876 147489 1.26 149365 34 1984 149141 1.31 151125 35 1870 146511 1.26 148381 36 2040 146346 1.37 148386 37 1807 146233 1.22 148040 38 1842 145245 1.25 147087 39 2035 145190 1.38 147225 40 1834 145329 1.25 147163 41 1908 144164 1.31 146072 42 1950 145095 1.33 147045 43 1894 143274 1.30 145168 44 1985 143414 1.37 145399 45 2424 142323 1.67 144747 46 1972 140093 1.39 142065 47 2043 136127 1.48 138170 48 2279 136897 1.64 139176 49 1901 136833 1.37 138734 50 1877 134264 1.38 136141 51 1855 133389 1.37 135244 52 1889 133014 1.40 134903 53 1868 131834 1.40 133702 54 2195 130526 1.65 132721 55 1837 131016 1.38 132853 56 1777 127666 1.37 129443 57 2008 126966 1.56 128974 58 1844 125965 1.44 127809 59 1712 123842 1.36 125554 60 1771 123690 1.41 125461 61 1787 122500 1.44 124287 62 1739 120058 1.43 121797 63 1827 122207 1.47 124034 64 1862 121497 1.51 123359 65 1936 118734 1.60 120670 66 1969 120851 1.60 122820 67 1901 121185 1.54 123086 68 1913 117456 1.60 119369 69 1923 116658 1.62 118581 70 1807 116828 1.52 118635 71 1723 114366 1.48 116089 72 1834 114157 1.58 115991 73 1942 113011 1.69 114953 74 1875 110759 1.66 112634 75 1992 109469 1.79 111461 76 1853 109491 1.66 111344 77 1835 99507 1.81 101342 78 1659 91007 1.79 92666 79 960 59007 1.60 59967 80 1267 59318 2.09 60585 81 2507 99070 2.47 101577 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 13972 496462 2.74 510434 2 15702 498300 3.05 514002 3 17458 499364 3.38 516822 4 13928 500148 2.71 514076 5 15358 503625 2.96 518983 6 17782 508264 3.38 526046 7 14217 510107 2.71 524324 8 14094 512737 2.68 526831 9 17736 510560 3.36 528296 10 14151 505767 2.72 519918 11 14896 499579 2.90 514475 12 17227 503998 3.31 521225 13 14295 501644 2.77 515939 14 16509 505700 3.16 522209 15 17881 501823 3.44 519704 16 14149 506016 2.72 520165 17 14013 502559 2.71 516572 18 17743 505298 3.39 523041 19 13812 501623 2.68 515435 20 14454 502386 2.80 516840 21 17473 504498 3.35 521971 22 14423 508045 2.76 522468 23 16090 499908 3.12 515998 24 17065 503320 3.28 520385 25 14721 496629 2.88 511350 26 14439 496979 2.82 511418 27 17048 494033 3.34 511081 28 13688 494326 2.69 508014 29 14171 487055 2.83 501226 30 16696 484195 3.33 500891 31 13516 480149 2.74 493665 32 15405 477824 3.12 493229 33 16895 472685 3.45 489580 34 14084 474734 2.88 488818 35 14547 470613 3.00 485160 36 17061 470827 3.50 487888 37 13456 478602 2.73 492058 38 14159 471072 2.92 485231 39 16932 475175 3.44 492107 40 13012 467541 2.71 480553 41 14667 463516 3.07 478183 42 16137 457719 3.41 473856 43 13620 454987 2.91 468607 44 14933 452536 3.19 467469 45 16568 449784 3.55 466352 46 13152 447310 2.86 460462 47 13505 444379 2.95 457884 48 16033 442800 3.49 458833 49 12659 439480 2.80 452139 50 13526 437100 3.00 450626 51 15576 434334 3.46 449910 52 12977 432409 2.91 445386 53 14895 425916 3.38 440811 54 15418 423359 3.51 438777 55 12973 420462 2.99 433435 56 13037 420367 3.01 433404 57 15871 415783 3.68 431654 58 12087 412144 2.85 424231 59 12747 410250 3.01 422997 60 15225 405559 3.62 420784 61 12691 401287 3.07 413978 62 13943 396278 3.40 410221 63 15256 396835 3.70 412091 64 12764 391439 3.16 404203 65 13046 384582 3.28 397628 66 14514 383591 3.65 398105 67 12069 381627 3.07 393696 68 12310 377288 3.16 389598 69 14096 374353 3.63 388449 70 11482 370190 3.01 381672 71 12585 364847 3.33 377432 72 13500 364374 3.57 377874 73 11319 359705 3.05 371024 74 11590 355621 3.16 367211 75 13455 350749 3.69 364204 76 10602 343138 3.00 353740 77 10687 334229 3.10 344916 78 11923 310715 3.70 322638 79 6465 215260 2.92 221725 80 7704 190551 3.89 198255 81 11896 316245 3.63 328141 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 13555 37235 26.69 50790 2 13828 37929 26.72 51757 3 13217 36306 26.69 49523 4 12301 34189 26.46 46490 5 13526 36649 26.96 50175 6 12857 34961 26.89 47818 7 13518 35560 27.54 49078 8 12541 33525 27.22 46066 9 12927 34712 27.14 47639 10 12495 32649 27.68 45144 11 11827 32792 26.51 44619 12 11688 30996 27.38 42684 13 12963 31590 29.10 44553 14 12444 32371 27.77 44815 15 14861 34231 30.27 49092 16 12339 30404 28.87 42743 17 12621 31058 28.89 43679 18 11431 29873 27.68 41304 19 11809 29376 28.67 41185 20 12647 29617 29.92 42264 21 11465 29638 27.89 41103 22 11394 29681 27.74 41075 23 11067 28809 27.75 39876 24 10501 28516 26.91 39017 25 13515 30936 30.40 44451 26 10457 26005 28.68 36462 27 10562 26473 28.52 37035 28 10741 26625 28.75 37366 29 10340 27005 27.69 37345 30 9668 25361 27.60 35029 31 9489 24796 27.68 34285 32 9705 25254 27.76 34959 33 9992 24453 29.01 34445 34 9802 24615 28.48 34417 35 9950 24519 28.87 34469 36 9131 24104 27.47 33235 37 9666 24134 28.60 33800 38 9266 23210 28.53 32476 39 8869 22059 28.68 30928 40 9391 23056 28.94 32447 41 8188 21816 27.29 30004 42 8279 21494 27.81 29773 43 9122 21467 29.82 30589 44 8498 21091 28.72 29589 45 8445 20268 29.41 28713 46 8812 20768 29.79 29580 47 8080 21079 27.71 29159 48 8879 21333 29.39 30212 49 7907 19515 28.83 27422 50 7570 19496 27.97 27066 51 8159 18618 30.47 26777 52 7386 18524 28.51 25910 53 7386 18718 28.29 26104 54 6862 17893 27.72 24755 55 6875 17833 27.82 24708 56 7053 17373 28.87 24426 57 6985 17232 28.84 24217 58 7007 17315 28.81 24322 59 6587 17112 27.79 23699 60 6493 16729 27.96 23222 61 6412 16559 27.91 22971 62 6438 16585 27.96 23023 63 6505 15920 29.01 22425 64 7163 16900 29.77 24063 65 6269 15845 28.35 22114 66 6258 15776 28.40 22034 67 6128 14894 29.15 21022 68 6009 14973 28.64 20982 69 6388 15157 29.65 21545 70 6470 15321 29.69 21791 71 5806 14637 28.40 20443 72 5650 14676 27.80 20326 73 5838 14331 28.95 20169 74 5825 14042 29.32 19867 75 5901 14351 29.14 20252 76 5823 14044 29.31 19867 77 6127 14790 29.29 20917 78 5422 13011 29.41 18433 79 4789 0 100.00 4789 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1732 80246 2.11 81978 2 1189 87098 1.35 88287 3 893 87738 1.01 88631 4 802 78301 1.01 79103 5 879 79751 1.09 80630 6 1012 83216 1.20 84228 7 988 78426 1.24 79414 8 957 74293 1.27 75250 9 1074 78716 1.35 79790 10 1127 76335 1.45 77462 11 1092 73155 1.47 74247 12 1062 74892 1.40 75954 13 1129 86241 1.29 87370 14 1004 72304 1.37 73308 15 999 75106 1.31 76105 16 872 75482 1.14 76354 17 735 68841 1.06 69576 18 834 72119 1.14 72953 19 776 67704 1.13 68480 20 763 66601 1.13 67364 21 665 64446 1.02 65111 22 709 61685 1.14 62394 23 659 63286 1.03 63945 24 643 63195 1.01 63838 25 616 59336 1.03 59952 26 609 59549 1.01 60158 27 650 60920 1.06 61570 28 670 58213 1.14 58883 29 656 59632 1.09 60288 30 664 58131 1.13 58795 31 663 55059 1.19 55722 32 640 53953 1.17 54593 33 681 60074 1.12 60755 34 561 55939 0.99 56500 35 597 54844 1.08 55441 36 589 54700 1.07 55289 37 727 52362 1.37 53089 38 564 50909 1.10 51473 39 635 52119 1.20 52754 40 683 51063 1.32 51746 41 611 50858 1.19 51469 42 650 51881 1.24 52531 43 581 50610 1.13 51191 44 553 47649 1.15 48202 45 547 49429 1.09 49976 46 523 46262 1.12 46785 47 535 49612 1.07 50147 48 490 47960 1.01 48450 49 529 47281 1.11 47810 50 493 46408 1.05 46901 51 502 47114 1.05 47616 52 500 44316 1.12 44816 53 451 43464 1.03 43915 54 454 45239 0.99 45693 55 500 42937 1.15 43437 56 461 41632 1.10 42093 57 482 43704 1.09 44186 58 428 40677 1.04 41105 59 423 40446 1.04 40869 60 395 40148 0.97 40543 61 460 38495 1.18 38955 62 393 38088 1.02 38481 63 451 38731 1.15 39182 64 382 37013 1.02 37395 65 361 40977 0.87 41338 66 394 36425 1.07 36819 67 443 36340 1.20 36783 68 401 34961 1.13 35362 69 409 36678 1.10 37087 70 482 36048 1.32 36530 71 410 37410 1.08 37820 72 386 35334 1.08 35720 73 369 33722 1.08 34091 74 367 33439 1.09 33806 75 402 33995 1.17 34397 76 354 32662 1.07 33016 77 360 32214 1.11 32574 78 324 31620 1.01 31944 79 261 0 100.00 261 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 8057 291052 2.69 299109 2 8151 282356 2.81 290507 3 8030 278083 2.81 286113 4 7325 266999 2.67 274324 5 7884 265972 2.88 273856 6 7475 263210 2.76 270685 7 7765 280189 2.70 287954 8 7432 264547 2.73 271979 9 7561 258811 2.84 266372 10 7889 250978 3.05 258867 11 7524 247017 2.96 254541 12 7333 240924 2.95 248257 13 7617 237332 3.11 244949 14 7512 234999 3.10 242511 15 7513 242576 3.00 250089 16 6832 239448 2.77 246280 17 6760 236936 2.77 243696 18 7002 248200 2.74 255202 19 6788 227651 2.90 234439 20 6665 238172 2.72 244837 21 6599 224209 2.86 230808 22 6521 227804 2.78 234325 23 6518 216803 2.92 223321 24 6046 214967 2.74 221013 25 6128 215071 2.77 221199 26 5798 218536 2.58 224334 27 5798 213319 2.65 219117 28 5818 208917 2.71 214735 29 5599 212527 2.57 218126 30 5731 207213 2.69 212944 31 5659 202386 2.72 208045 32 5490 192817 2.77 198307 33 5117 192263 2.59 197380 34 4998 188823 2.58 193821 35 4937 193623 2.49 198560 36 4883 187248 2.54 192131 37 4835 192398 2.45 197233 38 4786 185552 2.51 190338 39 4865 179021 2.65 183886 40 4812 185046 2.53 189858 41 4889 176213 2.70 181102 42 4574 173852 2.56 178426 43 4533 174993 2.52 179526 44 4555 169484 2.62 174039 45 4398 170898 2.51 175296 46 4526 164720 2.67 169246 47 4212 164747 2.49 168959 48 4211 171186 2.40 175397 49 4240 164814 2.51 169054 50 4125 158744 2.53 162869 51 4046 156516 2.52 160562 52 4043 156049 2.53 160092 53 4075 154192 2.57 158267 54 3813 155527 2.39 159340 55 3837 153289 2.44 157126 56 3739 147598 2.47 151337 57 3763 147126 2.49 150889 58 3889 147299 2.57 151188 59 3628 149250 2.37 152878 60 3828 143076 2.61 146904 61 3820 143663 2.59 147483 62 3662 142013 2.51 145675 63 3581 139481 2.50 143062 64 3586 138018 2.53 141604 65 3443 137038 2.45 140481 66 3349 135583 2.41 138932 67 3335 134087 2.43 137422 68 3270 130296 2.45 133566 69 3262 129524 2.46 132786 70 3349 129195 2.53 132544 71 3303 127361 2.53 130664 72 3069 127195 2.36 130264 73 3023 125396 2.35 128419 74 2965 122949 2.35 125914 75 2865 120760 2.32 123625 76 2720 118878 2.24 121598 77 2730 119037 2.24 121767 78 2366 112345 2.06 114711 79 1695 0 100.00 1695