/gscratch/scrubbed/sr320/0924/EPI-159_S6_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-159_S6_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
15443938
Paired-end alignments with a unique best hit
6261661
Pairs without alignments under any condition
7560902
Pairs that did not map uniquely
1621375
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
153549770
Methylated C's in CpG context
5315174
Methylated C's in CHG context
468224
Methylated C's in CHH context
2827416
Methylated C's in Unknown context
27185
Unmethylated C's in CpG context
14496058
Unmethylated C's in CHG context
31220586
Unmethylated C's in CHH context
99222312
Unmethylated C's in Unknown context
319739
Percentage methylation (CpG context)
26.8%
Percentage methylation (CHG context)
1.5%
Percentage methylation (CHH context)
2.8%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3093116
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3168545
original bottom strand
Deduplication
Alignments analysed
6261661
Unique alignments
4557124
Duplicates removed
1704537
Duplicated alignments were found at 1068007 different positions
