CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 41882 103588 28.79 145470 2 41495 102110 28.90 143605 3 41370 102690 28.72 144060 4 40585 103494 28.17 144079 5 39972 101790 28.20 141762 6 40354 101315 28.48 141669 7 39857 103518 27.80 143375 8 40756 103903 28.17 144659 9 39921 103589 27.82 143510 10 39582 103697 27.63 143279 11 40586 102617 28.34 143203 12 39425 100915 28.09 140340 13 39831 100626 28.36 140457 14 40414 101075 28.56 141489 15 40032 100497 28.49 140529 16 39668 101169 28.17 140837 17 38863 99050 28.18 137913 18 38676 99509 27.99 138185 19 39793 101250 28.21 141043 20 39036 100127 28.05 139163 21 39310 100192 28.18 139502 22 40096 102444 28.13 142540 23 39525 100342 28.26 139867 24 39168 100483 28.05 139651 25 39891 99454 28.63 139345 26 40186 100815 28.50 141001 27 39310 98342 28.56 137652 28 38823 98778 28.21 137601 29 40490 99141 29.00 139631 30 39111 99823 28.15 138934 31 39318 99258 28.37 138576 32 39721 100829 28.26 140550 33 38586 97941 28.26 136527 34 38108 96547 28.30 134655 35 37948 95328 28.47 133276 36 37616 94754 28.42 132370 37 37905 95436 28.43 133341 38 37309 95435 28.11 132744 39 37597 94134 28.54 131731 40 36838 94059 28.14 130897 41 37832 93328 28.84 131160 42 36657 93337 28.20 129994 43 36146 92512 28.09 128658 44 35851 91887 28.07 127738 45 36296 91773 28.34 128069 46 36520 91178 28.60 127698 47 35818 90506 28.35 126324 48 35433 90197 28.20 125630 49 35737 89792 28.47 125529 50 34922 89627 28.04 124549 51 34537 87406 28.32 121943 52 33832 87075 27.98 120907 53 33765 86342 28.11 120107 54 33614 85757 28.16 119371 55 32522 85605 27.53 118127 56 32616 84574 27.83 117190 57 32682 83609 28.10 116291 58 32809 84148 28.05 116957 59 32333 82377 28.19 114710 60 31677 82609 27.72 114286 61 31466 82026 27.73 113492 62 30848 80678 27.66 111526 63 31193 80849 27.84 112042 64 30690 79769 27.78 110459 65 30680 78996 27.97 109676 66 29855 78139 27.65 107994 67 29124 77046 27.43 106170 68 29256 77056 27.52 106312 69 28728 76009 27.43 104737 70 28573 76031 27.32 104604 71 28052 74686 27.30 102738 72 27778 74251 27.23 102029 73 27676 74116 27.19 101792 74 27510 73002 27.37 100512 75 26998 72590 27.11 99588 76 26884 72156 27.14 99040 77 25658 70004 26.82 95662 78 24577 65870 27.17 90447 79 19146 51191 27.22 70337 80 25083 65363 27.73 90446 81 22568 64170 26.02 86738 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2306 221603 1.03 223909 2 2582 218859 1.17 221441 3 2440 223193 1.08 225633 4 2260 224220 1.00 226480 5 2250 218959 1.02 221209 6 2622 219936 1.18 222558 7 2335 223832 1.03 226167 8 2251 221474 1.01 223725 9 2545 224219 1.12 226764 10 2236 227196 0.97 229432 11 2212 221271 0.99 223483 12 2230 224594 0.98 226824 13 2155 225855 0.95 228010 14 2157 222297 0.96 224454 15 2315 223280 1.03 225595 16 1984 224937 0.87 226921 17 2126 219786 0.96 221912 18 2259 223900 1.00 226159 19 2112 222532 0.94 224644 20 2235 221267 1.00 223502 21 2197 221084 0.98 223281 22 2333 222492 1.04 224825 23 2266 219506 1.02 221772 24 2369 221577 1.06 223946 25 2306 221972 1.03 224278 26 2247 219797 1.01 222044 27 2469 219894 1.11 222363 28 2408 223774 1.06 226182 29 2278 218494 1.03 220772 30 2483 217177 1.13 219660 31 2371 220416 1.06 222787 32 2499 218562 1.13 221061 33 2519 216183 1.15 218702 34 2520 218695 1.14 221215 35 2549 215051 1.17 217600 36 2552 215357 1.17 217909 37 2482 215093 1.14 217575 38 2513 212612 1.17 215125 39 2523 213098 1.17 215621 40 2454 213792 1.13 216246 41 2462 210728 1.15 213190 42 2627 210651 1.23 213278 43 2634 209356 1.24 211990 44 2664 207747 1.27 210411 45 2856 207148 1.36 210004 46 2616 205018 1.26 207634 47 2564 200252 1.26 202816 48 2861 201273 1.40 204134 49 2635 200702 1.30 203337 50 2552 195722 1.29 198274 51 2536 194916 1.28 197452 52 2546 195760 1.28 198306 53 2495 193262 1.27 195757 54 2694 191218 1.39 193912 55 2434 191655 1.25 194089 56 2464 186139 1.31 188603 57 2646 186292 1.40 188938 58 2430 184756 1.30 187186 59 2477 182366 1.34 184843 60 2537 180412 1.39 182949 61 2509 179050 1.38 181559 62 2521 175191 1.42 177712 63 2552 177889 1.41 180441 64 2518 177059 1.40 179577 65 2748 174751 1.55 177499 66 2550 173485 1.45 176035 67 2369 174244 1.34 176613 68 2580 170214 1.49 172794 69 2508 169101 1.46 171609 70 2531 168709 1.48 171240 71 2457 166193 1.46 168650 72 2683 165898 1.59 168581 73 2621 163883 1.57 166504 74 2583 160204 1.59 162787 75 2481 158616 1.54 161097 76 2504 157123 1.57 159627 77 2302 144608 1.57 146910 78 2212 131332 1.66 133544 79 1404 85741 1.61 87145 80 1585 86596 1.80 88181 81 3316 142774 2.27 146090 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11968 717212 1.64 729180 2 13269 720622 1.81 733891 3 14515 720580 1.97 735095 4 11852 723248 1.61 735100 5 12673 726046 1.72 738719 6 14508 732585 1.94 747093 7 12229 734835 1.64 747064 8 12227 739177 1.63 751404 9 14523 739441 1.93 753964 10 11852 733003 1.59 744855 11 12654 726968 1.71 739622 12 13903 730351 1.87 744254 13 11965 730524 1.61 742489 14 13442 734296 1.80 747738 15 14283 728037 1.92 742320 16 12085 736520 1.61 748605 17 12154 727765 1.64 739919 18 14103 732778 1.89 746881 19 11633 726899 1.58 738532 20 12164 726505 1.65 738669 21 13934 729676 1.87 743610 22 12221 732063 1.64 744284 23 13158 724487 1.78 737645 24 13762 728069 1.86 741831 25 12335 721336 1.68 733671 26 12114 721074 1.65 733188 27 13738 717424 1.88 731162 28 11552 716648 1.59 728200 29 11750 712204 1.62 723954 30 13332 708560 1.85 721892 31 11381 701724 1.60 713105 32 12334 699499 1.73 711833 33 13751 692775 1.95 706526 34 11900 691573 1.69 703473 35 12033 686694 1.72 698727 36 13684 685043 1.96 698727 37 11358 690901 1.62 702259 38 11772 686173 1.69 697945 39 13489 688804 1.92 702293 40 11003 680560 1.59 691563 41 12040 675155 1.75 687195 42 13227 666412 1.95 679639 43 11501 665200 1.70 676701 44 12363 659125 1.84 671488 45 13236 658276 1.97 671512 46 11256 652361 1.70 663617 47 11452 647868 1.74 659320 48 12770 643412 1.95 656182 49 11012 640661 1.69 651673 50 11184 634286 1.73 645470 51 12667 630432 1.97 643099 52 11070 629612 1.73 640682 53 12035 619423 1.91 631458 54 12707 618495 2.01 631202 55 10789 615115 1.72 625904 56 10930 611674 1.76 622604 57 12745 604187 2.07 616932 58 10335 599948 1.69 610283 59 10768 595939 1.77 606707 60 12103 590615 2.01 602718 61 10492 582429 1.77 592921 62 11251 576833 1.91 588084 63 12193 576256 2.07 588449 64 10567 568578 1.82 579145 65 10780 559849 1.89 570629 66 11592 553730 2.05 565322 67 9912 550419 1.77 560331 68 10294 543930 1.86 554224 69 11274 537793 2.05 549067 70 9595 534802 1.76 544397 71 10313 527926 1.92 538239 72 10984 524592 2.05 535576 73 9426 520030 1.78 529456 74 9776 513079 1.87 522855 75 10797 505277 2.09 516074 76 9051 496100 1.79 505151 77 8950 482619 1.82 491569 78 9528 448574 2.08 458102 79 5790 310378 1.83 316168 80 6370 276115 2.25 282485 81 9745 452607 2.11 462352 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 18993 54523 25.84 73516 2 19275 55368 25.82 74643 3 18524 54103 25.51 72627 4 17383 50864 25.47 68247 5 19140 54320 26.05 73460 6 17973 51473 25.88 69446 7 19275 52504 26.85 71779 8 17657 50088 26.06 67745 9 18350 51150 26.40 69500 10 17315 48103 26.47 65418 11 16997 48474 25.96 65471 12 16331 45994 26.20 62325 13 18397 46857 28.19 65254 14 17171 48416 26.18 65587 15 20847 51342 28.88 72189 16 17462 45549 27.71 63011 17 17863 46408 27.79 64271 18 16283 44219 26.91 60502 19 16790 43996 27.62 60786 20 17861 43683 29.02 61544 21 15415 43530 26.15 58945 22 15717 44384 26.15 60101 23 15918 42844 27.09 58762 24 15190 41692 26.70 56882 25 18120 45995 28.26 64115 26 14688 38630 27.55 53318 27 14828 39360 27.36 54188 28 14643 39466 27.06 54109 29 14327 39856 26.44 54183 30 13888 37513 27.02 51401 31 13456 36493 26.94 49949 32 13928 37279 27.20 51207 33 13887 36225 27.71 50112 34 13664 36561 27.21 50225 35 14095 36228 28.01 50323 36 12776 35307 26.57 48083 37 13202 35581 27.06 48783 38 13222 34719 27.58 47941 39 12641 33014 27.69 45655 40 12888 33653 27.69 46541 41 11566 32822 26.06 44388 42 11677 31815 26.85 43492 43 12589 31690 28.43 44279 44 11843 30755 27.80 42598 45 11368 29215 28.01 40583 46 12159 30826 28.29 42985 47 11508 31234 26.92 42742 48 12328 32058 27.77 44386 49 11078 28328 28.11 39406 50 10755 28649 27.29 39404 51 10921 27726 28.26 38647 52 10379 26906 27.84 37285 53 10421 27649 27.37 38070 54 9414 26415 26.27 35829 55 9510 26373 26.50 35883 56 9871 25632 27.80 35503 57 9639 25479 27.45 35118 58 9551 25379 27.34 34930 59 9244 25093 26.92 34337 60 8938 24590 26.66 33528 61 9100 24328 27.22 33428 62 8963 24176 27.05 33139 63 9035 23566 27.71 32601 64 10188 25630 28.44 35818 65 8645 23175 27.17 31820 66 8605 22930 27.29 31535 67 8580 22138 27.93 30718 68 8203 22124 27.05 30327 69 8798 22646 27.98 31444 70 8693 22712 27.68 31405 71 8140 21996 27.01 30136 72 8118 21471 27.44 29589 73 8020 20855 27.77 28875 74 8065 21334 27.43 29399 75 8191 20698 28.35 28889 76 7888 20551 27.74 28439 77 8508 22054 27.84 30562 78 7581 19015 28.50 26596 79 6841 0 100.00 6841 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1667 116007 1.42 117674 2 1481 125882 1.16 127363 3 1169 127360 0.91 128529 4 1047 112324 0.92 113371 5 1084 114628 0.94 115712 6 1214 120031 1.00 121245 7 1193 112074 1.05 113267 8 1222 106967 1.13 108189 9 1357 114706 1.17 116063 10 1385 110034 1.24 111419 11 1347 105043 1.27 106390 12 1313 108367 1.20 109680 13 1422 124361 1.13 125783 14 1193 103968 1.13 105161 15 1104 108332 1.01 109436 16 1096 107697 1.01 108793 17 923 99117 0.92 100040 18 928 105177 0.87 106105 19 910 96993 0.93 97903 20 927 95528 0.96 96455 21 834 93362 0.89 94196 22 847 88171 0.95 89018 23 825 90649 0.90 91474 24 863 90474 0.94 91337 25 826 85395 0.96 86221 26 821 85034 0.96 85855 27 803 87256 0.91 88059 28 804 83826 0.95 84630 29 817 86562 0.94 87379 30 826 83440 0.98 84266 31 788 79839 0.98 80627 32 755 77330 0.97 78085 33 844 86458 0.97 87302 34 785 79410 0.98 80195 35 780 77583 1.00 78363 36 764 78039 0.97 78803 37 834 74125 1.11 74959 38 755 72581 1.03 73336 39 778 75186 1.02 75964 40 790 73550 1.06 74340 41 666 72320 0.91 72986 42 746 74207 1.00 74953 43 763 72714 1.04 73477 44 696 67671 1.02 68367 45 683 70464 0.96 71147 46 617 65151 0.94 65768 47 694 70698 0.97 71392 48 611 67782 0.89 68393 49 745 66980 1.10 67725 50 639 66583 0.95 67222 51 620 68137 0.90 68757 52 635 62645 1.00 63280 53 601 61554 0.97 62155 54 660 64239 1.02 64899 55 609 61060 0.99 61669 56 554 58953 0.93 59507 57 572 62312 0.91 62884 58 564 57687 0.97 58251 59 546 57744 0.94 58290 60 526 56743 0.92 57269 61 527 54782 0.95 55309 62 505 53602 0.93 54107 63 524 54230 0.96 54754 64 524 53009 0.98 53533 65 553 58159 0.94 58712 66 487 52064 0.93 52551 67 507 51769 0.97 52276 68 510 49589 1.02 50099 69 555 51688 1.06 52243 70 583 51335 1.12 51918 71 535 53871 0.98 54406 72 507 50892 0.99 51399 73 479 48396 0.98 48875 74 500 46699 1.06 47199 75 504 48514 1.03 49018 76 494 45702 1.07 46196 77 470 45500 1.02 45970 78 409 45367 0.89 45776 79 281 0 100.00 281 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 6705 417009 1.58 423714 2 6564 402756 1.60 409320 3 6490 396246 1.61 402736 4 6186 381376 1.60 387562 5 6344 379148 1.65 385492 6 6178 374658 1.62 380836 7 6550 400487 1.61 407037 8 6157 379540 1.60 385697 9 6204 371932 1.64 378136 10 6333 359688 1.73 366021 11 6342 354200 1.76 360542 12 6163 343622 1.76 349785 13 6181 340038 1.79 346219 14 6268 336898 1.83 343166 15 6329 347966 1.79 354295 16 5647 342045 1.62 347692 17 5577 338456 1.62 344033 18 5718 354737 1.59 360455 19 5444 324549 1.65 329993 20 5382 340129 1.56 345511 21 5255 320551 1.61 325806 22 5248 327164 1.58 332412 23 5233 309820 1.66 315053 24 4772 305582 1.54 310354 25 5066 307151 1.62 312217 26 4800 310273 1.52 315073 27 4747 302982 1.54 307729 28 4770 296803 1.58 301573 29 4584 302654 1.49 307238 30 4515 295972 1.50 300487 31 4542 287502 1.56 292044 32 4337 274076 1.56 278413 33 4222 273620 1.52 277842 34 4135 267748 1.52 271883 35 4386 277052 1.56 281438 36 4080 266473 1.51 270553 37 4081 274078 1.47 278159 38 4066 263757 1.52 267823 39 3950 253620 1.53 257570 40 4047 261299 1.53 265346 41 3944 249598 1.56 253542 42 3747 246663 1.50 250410 43 3755 248662 1.49 252417 44 3699 240135 1.52 243834 45 3673 243173 1.49 246846 46 3652 234005 1.54 237657 47 3518 234167 1.48 237685 48 3623 242226 1.47 245849 49 3584 233934 1.51 237518 50 3364 224936 1.47 228300 51 3440 221931 1.53 225371 52 3313 220683 1.48 223996 53 3395 217947 1.53 221342 54 3191 218774 1.44 221965 55 3164 217507 1.43 220671 56 3093 208128 1.46 211221 57 3017 207845 1.43 210862 58 3105 207847 1.47 210952 59 3068 210897 1.43 213965 60 2968 203290 1.44 206258 61 3049 203550 1.48 206599 62 3011 199654 1.49 202665 63 2971 197164 1.48 200135 64 2980 195184 1.50 198164 65 2861 192481 1.46 195342 66 2822 191345 1.45 194167 67 2747 189956 1.43 192703 68 2678 182836 1.44 185514 69 2703 182729 1.46 185432 70 2715 181042 1.48 183757 71 2604 179833 1.43 182437 72 2496 178687 1.38 181183 73 2497 175810 1.40 178307 74 2455 174488 1.39 176943 75 2436 170811 1.41 173247 76 2343 167629 1.38 169972 77 2263 166650 1.34 168913 78 1949 159932 1.20 161881 79 1406 0 100.00 1406