/gscratch/scrubbed/sr320/0924/EPI-154_S5_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-154_S5_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
25217448
Paired-end alignments with a unique best hit
9258376
Pairs without alignments under any condition
13652807
Pairs that did not map uniquely
2306265
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
223981828
Methylated C's in CpG context
7732407
Methylated C's in CHG context
601411
Methylated C's in CHH context
2476347
Methylated C's in Unknown context
28441
Unmethylated C's in CpG context
21485179
Unmethylated C's in CHG context
46296623
Unmethylated C's in CHH context
145389861
Unmethylated C's in Unknown context
474204
Percentage methylation (CpG context)
26.5%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
1.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4559541
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4698835
original bottom strand
Deduplication
Alignments analysed
9258376
Unique alignments
6653225
Duplicates removed
2605151
Duplicated alignments were found at 1620665 different positions