CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 40983 104793 28.11 145776 2 40193 103512 27.97 143705 3 40102 102550 28.11 142652 4 39812 103548 27.77 143360 5 39351 103135 27.62 142486 6 39512 101852 27.95 141364 7 39187 104995 27.18 144182 8 40067 104642 27.69 144709 9 39370 105795 27.12 145165 10 39010 105477 27.00 144487 11 40011 103218 27.93 143229 12 39017 100945 27.88 139962 13 39164 100366 28.07 139530 14 39419 100529 28.17 139948 15 39483 99681 28.37 139164 16 39030 100415 27.99 139445 17 38266 99364 27.80 137630 18 38213 99826 27.68 138039 19 39123 101298 27.86 140421 20 39265 100267 28.14 139532 21 38999 100172 28.02 139171 22 40008 101778 28.22 141786 23 39017 100725 27.92 139742 24 38784 99147 28.12 137931 25 39226 99300 28.32 138526 26 39499 99497 28.42 138996 27 38896 97809 28.45 136705 28 38684 97813 28.34 136497 29 39793 98530 28.77 138323 30 38737 99228 28.08 137965 31 38467 98453 28.09 136920 32 39148 101428 27.85 140576 33 38192 97093 28.23 135285 34 37312 96178 27.95 133490 35 37245 93657 28.45 130902 36 36514 92646 28.27 129160 37 36969 93740 28.28 130709 38 36565 93393 28.14 129958 39 36889 91703 28.69 128592 40 36297 92587 28.16 128884 41 36376 91004 28.56 127380 42 35385 92016 27.77 127401 43 34955 90390 27.89 125345 44 34669 90085 27.79 124754 45 35046 89249 28.20 124295 46 35438 89438 28.38 124876 47 34574 87863 28.24 122437 48 33992 87525 27.97 121517 49 33898 86960 28.05 120858 50 33637 86037 28.11 119674 51 33028 84215 28.17 117243 52 32599 84457 27.85 117056 53 32583 83122 28.16 115705 54 32194 82561 28.05 114755 55 31190 81991 27.56 113181 56 31403 81180 27.89 112583 57 31631 80013 28.33 111644 58 31314 80173 28.09 111487 59 31224 79142 28.29 110366 60 30170 78216 27.84 108386 61 30059 78278 27.75 108337 62 29379 77035 27.61 106414 63 29819 77707 27.73 107526 64 29688 76994 27.83 106682 65 29209 74856 28.07 104065 66 28234 74049 27.60 102283 67 27711 73762 27.31 101473 68 27619 73051 27.44 100670 69 27722 72375 27.70 100097 70 27179 72395 27.30 99574 71 26708 70526 27.47 97234 72 26597 70861 27.29 97458 73 26499 70366 27.36 96865 74 26228 69208 27.48 95436 75 25654 68449 27.26 94103 76 25698 69250 27.07 94948 77 24838 66346 27.24 91184 78 23218 62408 27.12 85626 79 18266 48222 27.47 66488 80 23957 61476 28.04 85433 81 21445 61157 25.96 82602 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2373 224216 1.05 226589 2 2417 221210 1.08 223627 3 2479 224713 1.09 227192 4 2327 226668 1.02 228995 5 2304 221246 1.03 223550 6 2563 222913 1.14 225476 7 2425 225768 1.06 228193 8 2304 223405 1.02 225709 9 2641 227349 1.15 229990 10 2450 228678 1.06 231128 11 2533 223496 1.12 226029 12 2399 226618 1.05 229017 13 2411 227016 1.05 229427 14 2275 224205 1.00 226480 15 2337 224170 1.03 226507 16 2218 226453 0.97 228671 17 2208 220816 0.99 223024 18 2458 224092 1.08 226550 19 2333 225898 1.02 228231 20 2388 222052 1.06 224440 21 2494 222631 1.11 225125 22 2551 223385 1.13 225936 23 2561 218737 1.16 221298 24 2459 222399 1.09 224858 25 2561 222434 1.14 224995 26 2499 219510 1.13 222009 27 2633 218863 1.19 221496 28 2637 223612 1.17 226249 29 2685 216963 1.22 219648 30 2604 216995 1.19 219599 31 2559 218826 1.16 221385 32 2698 217261 1.23 219959 33 2743 213687 1.27 216430 34 2699 216660 1.23 219359 35 2667 212275 1.24 214942 36 2712 214113 1.25 216825 37 2724 212026 1.27 214750 38 2649 209426 1.25 212075 39 2731 210386 1.28 213117 40 2600 211348 1.22 213948 41 2733 207935 1.30 210668 42 2719 208071 1.29 210790 43 2698 207131 1.29 209829 44 2826 206876 1.35 209702 45 2927 205479 1.40 208406 46 2749 201982 1.34 204731 47 2790 194982 1.41 197772 48 3003 196968 1.50 199971 49 2696 196258 1.36 198954 50 2644 191414 1.36 194058 51 2704 193040 1.38 195744 52 2643 191735 1.36 194378 53 2625 188166 1.38 190791 54 2806 186948 1.48 189754 55 2650 187521 1.39 190171 56 2510 182071 1.36 184581 57 2818 182126 1.52 184944 58 2517 180962 1.37 183479 59 2474 175967 1.39 178441 60 2561 176317 1.43 178878 61 2571 174648 1.45 177219 62 2536 170783 1.46 173319 63 2678 172801 1.53 175479 64 2577 173696 1.46 176273 65 2731 168626 1.59 171357 66 2533 169377 1.47 171910 67 2568 169513 1.49 172081 68 2702 166241 1.60 168943 69 2504 163853 1.51 166357 70 2520 163066 1.52 165586 71 2495 159670 1.54 162165 72 2559 160985 1.56 163544 73 2586 159203 1.60 161789 74 2620 154749 1.66 157369 75 2524 153053 1.62 155577 76 2555 151734 1.66 154289 77 2451 138221 1.74 140672 78 2241 126945 1.73 129186 79 1341 80840 1.63 82181 80 1583 82856 1.87 84439 81 3383 137292 2.40 140675 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10703 702726 1.50 713429 2 11447 706797 1.59 718244 3 12746 707953 1.77 720699 4 10540 708258 1.47 718798 5 11185 711433 1.55 722618 6 12607 716311 1.73 728918 7 10772 720749 1.47 731521 8 10953 722167 1.49 733120 9 12907 722298 1.76 735205 10 10958 716625 1.51 727583 11 11279 706956 1.57 718235 12 12635 712944 1.74 725579 13 10808 710568 1.50 721376 14 11687 715933 1.61 727620 15 12673 710555 1.75 723228 16 10725 715821 1.48 726546 17 10986 709824 1.52 720810 18 12446 711857 1.72 724303 19 10469 708225 1.46 718694 20 10689 707811 1.49 718500 21 12272 709725 1.70 721997 22 11060 714025 1.53 725085 23 11294 703409 1.58 714703 24 12240 707074 1.70 719314 25 10963 699997 1.54 710960 26 10755 697528 1.52 708283 27 12304 693560 1.74 705864 28 10430 692560 1.48 702990 29 10686 684507 1.54 695193 30 12008 681671 1.73 693679 31 10458 673414 1.53 683872 32 11089 669708 1.63 680797 33 12196 665932 1.80 678128 34 10537 664691 1.56 675228 35 10731 660726 1.60 671457 36 12134 659578 1.81 671712 37 10209 663986 1.51 674195 38 10475 660078 1.56 670553 39 12052 662048 1.79 674100 40 9906 652039 1.50 661945 41 10812 647396 1.64 658208 42 11517 637686 1.77 649203 43 9976 634310 1.55 644286 44 10710 629724 1.67 640434 45 11433 625005 1.80 636438 46 10040 620397 1.59 630437 47 9978 615525 1.60 625503 48 11283 612748 1.81 624031 49 9710 608038 1.57 617748 50 9819 602729 1.60 612548 51 10962 599489 1.80 610451 52 9764 596218 1.61 605982 53 10295 586580 1.72 596875 54 10775 585020 1.81 595795 55 9655 580098 1.64 589753 56 9501 575387 1.62 584888 57 11108 570029 1.91 581137 58 9221 565529 1.60 574750 59 9450 561688 1.65 571138 60 10664 557813 1.88 568477 61 9172 548606 1.64 557778 62 9873 543254 1.78 553127 63 10613 540996 1.92 551609 64 9281 534459 1.71 543740 65 9666 522913 1.81 532579 66 10343 519728 1.95 530071 67 8877 517198 1.69 526075 68 9210 511838 1.77 521048 69 9854 504700 1.92 514554 70 8511 502050 1.67 510561 71 8819 495013 1.75 503832 72 9562 491089 1.91 500651 73 8274 485492 1.68 493766 74 8710 478040 1.79 486750 75 9525 472038 1.98 481563 76 7961 462962 1.69 470923 77 7927 447865 1.74 455792 78 8536 415989 2.01 424525 79 4941 288648 1.68 293589 80 5449 255084 2.09 260533 81 8770 419189 2.05 427959 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 17603 50822 25.73 68425 2 17733 52223 25.35 69956 3 16903 49916 25.30 66819 4 15679 47283 24.90 62962 5 17478 50500 25.71 67978 6 16229 47475 25.48 63704 7 17258 48721 26.16 65979 8 16163 46887 25.64 63050 9 16872 47444 26.23 64316 10 15879 44792 26.17 60671 11 15262 45049 25.31 60311 12 14948 42336 26.09 57284 13 17071 43045 28.40 60116 14 15986 43959 26.67 59945 15 19363 46582 29.36 65945 16 16138 41343 28.08 57481 17 16382 42639 27.76 59021 18 14790 40188 26.90 54978 19 15082 40305 27.23 55387 20 16268 39735 29.05 56003 21 14568 39457 26.97 54025 22 14796 39696 27.15 54492 23 14583 39008 27.21 53591 24 13808 37692 26.81 51500 25 17290 41594 29.36 58884 26 13493 34612 28.05 48105 27 13413 35499 27.42 48912 28 13549 35750 27.48 49299 29 12895 35831 26.46 48726 30 12672 34058 27.12 46730 31 12457 32869 27.48 45326 32 12004 33238 26.53 45242 33 12976 32118 28.78 45094 34 12552 32377 27.94 44929 35 12372 32289 27.70 44661 36 11491 31622 26.65 43113 37 11991 31862 27.34 43853 38 11713 30635 27.66 42348 39 11357 29420 27.85 40777 40 11523 29901 27.82 41424 41 10590 28693 26.96 39283 42 10463 28257 27.02 38720 43 11265 27921 28.75 39186 44 10625 27783 27.66 38408 45 10649 26100 28.98 36749 46 10871 27044 28.67 37915 47 10168 27803 26.78 37971 48 11356 28525 28.47 39881 49 9887 25355 28.05 35242 50 9535 25281 27.39 34816 51 9774 24057 28.89 33831 52 9308 23689 28.21 32997 53 9312 24798 27.30 34110 54 8302 23317 26.26 31619 55 8627 23055 27.23 31682 56 8721 22782 27.68 31503 57 8568 22568 27.52 31136 58 8732 22480 27.98 31212 59 8025 22285 26.48 30310 60 7997 21331 27.27 29328 61 7834 21123 27.05 28957 62 7953 21233 27.25 29186 63 8049 20430 28.26 28479 64 9096 22370 28.91 31466 65 7661 20249 27.45 27910 66 7517 20070 27.25 27587 67 7472 19478 27.73 26950 68 7335 19305 27.53 26640 69 7818 19700 28.41 27518 70 7690 19576 28.20 27266 71 7203 19017 27.47 26220 72 6917 18641 27.06 25558 73 7039 18251 27.83 25290 74 7156 18071 28.37 25227 75 7140 18101 28.29 25241 76 6830 18121 27.37 24951 77 7522 18687 28.70 26209 78 6594 16403 28.67 22997 79 5697 0 100.00 5697 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1522 109410 1.37 110932 2 1344 118989 1.12 120333 3 1151 120791 0.94 121942 4 1053 106798 0.98 107851 5 1128 108349 1.03 109477 6 1199 113457 1.05 114656 7 1280 105701 1.20 106981 8 1323 100852 1.29 102175 9 1493 108221 1.36 109714 10 1485 103041 1.42 104526 11 1518 99377 1.50 100895 12 1501 101566 1.46 103067 13 1614 117865 1.35 119479 14 1419 97082 1.44 98501 15 1210 101932 1.17 103142 16 1106 100724 1.09 101830 17 997 92383 1.07 93380 18 1036 98475 1.04 99511 19 964 89744 1.06 90708 20 975 88754 1.09 89729 21 909 87506 1.03 88415 22 884 81607 1.07 82491 23 888 84717 1.04 85605 24 872 83815 1.03 84687 25 791 78665 1.00 79456 26 807 78569 1.02 79376 27 848 82107 1.02 82955 28 849 76342 1.10 77191 29 831 80275 1.02 81106 30 846 77328 1.08 78174 31 760 72736 1.03 73496 32 796 70862 1.11 71658 33 772 79559 0.96 80331 34 776 73309 1.05 74085 35 725 71829 1.00 72554 36 745 71683 1.03 72428 37 792 68830 1.14 69622 38 777 66631 1.15 67408 39 748 69179 1.07 69927 40 734 66581 1.09 67315 41 685 66916 1.01 67601 42 760 68451 1.10 69211 43 772 66363 1.15 67135 44 601 61595 0.97 62196 45 690 64844 1.05 65534 46 617 59487 1.03 60104 47 725 64749 1.11 65474 48 615 62002 0.98 62617 49 623 60786 1.01 61409 50 642 59959 1.06 60601 51 669 61801 1.07 62470 52 603 56805 1.05 57408 53 626 55658 1.11 56284 54 601 58429 1.02 59030 55 566 55871 1.00 56437 56 551 53852 1.01 54403 57 599 56334 1.05 56933 58 552 52271 1.04 52823 59 564 52395 1.06 52959 60 553 51229 1.07 51782 61 539 49574 1.08 50113 62 486 48536 0.99 49022 63 562 49657 1.12 50219 64 527 47318 1.10 47845 65 561 52155 1.06 52716 66 462 47020 0.97 47482 67 489 46354 1.04 46843 68 427 43847 0.96 44274 69 477 46946 1.01 47423 70 527 45170 1.15 45697 71 517 47652 1.07 48169 72 454 44362 1.01 44816 73 460 42956 1.06 43416 74 452 41825 1.07 42277 75 498 43701 1.13 44199 76 427 40766 1.04 41193 77 470 40408 1.15 40878 78 373 40469 0.91 40842 79 264 0 100.00 264 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 5915 388527 1.50 394442 2 5866 373314 1.55 379180 3 5627 366444 1.51 372071 4 5289 352294 1.48 357583 5 5610 349597 1.58 355207 6 5482 346955 1.56 352437 7 5580 370729 1.48 376309 8 5603 348856 1.58 354459 9 5707 340060 1.65 345767 10 5660 330629 1.68 336289 11 5651 323633 1.72 329284 12 5539 314488 1.73 320027 13 5576 310702 1.76 316278 14 5433 307545 1.74 312978 15 5655 316826 1.75 322481 16 4899 311921 1.55 316820 17 4825 308217 1.54 313042 18 4977 325364 1.51 330341 19 4695 294611 1.57 299306 20 4708 309745 1.50 314453 21 4446 291173 1.50 295619 22 4428 294183 1.48 298611 23 4339 279147 1.53 283486 24 4186 276029 1.49 280215 25 4239 275650 1.51 279889 26 4093 278184 1.45 282277 27 4001 272537 1.45 276538 28 4070 267076 1.50 271146 29 4080 271961 1.48 276041 30 3959 263344 1.48 267303 31 3942 257652 1.51 261594 32 3739 244869 1.50 248608 33 3711 244768 1.49 248479 34 3496 238192 1.45 241688 35 3691 247938 1.47 251629 36 3508 237862 1.45 241370 37 3481 245950 1.40 249431 38 3515 235856 1.47 239371 39 3497 225374 1.53 228871 40 3360 232573 1.42 235933 41 3286 222058 1.46 225344 42 3335 219290 1.50 222625 43 3295 221405 1.47 224700 44 3117 213398 1.44 216515 45 3133 216470 1.43 219603 46 3117 207100 1.48 210217 47 2964 207744 1.41 210708 48 3147 215260 1.44 218407 49 3029 207678 1.44 210707 50 2833 199051 1.40 201884 51 2945 197175 1.47 200120 52 2863 194985 1.45 197848 53 2822 193026 1.44 195848 54 2840 193276 1.45 196116 55 2764 191651 1.42 194415 56 2708 183812 1.45 186520 57 2741 182866 1.48 185607 58 2713 183187 1.46 185900 59 2662 186539 1.41 189201 60 2718 178032 1.50 180750 61 2730 179903 1.49 182633 62 2504 175638 1.41 178142 63 2647 173775 1.50 176422 64 2557 171680 1.47 174237 65 2363 169779 1.37 172142 66 2342 168142 1.37 170484 67 2290 166495 1.36 168785 68 2335 160605 1.43 162940 69 2404 160108 1.48 162512 70 2430 158787 1.51 161217 71 2293 157119 1.44 159412 72 2283 156160 1.44 158443 73 2203 153457 1.42 155660 74 2127 151337 1.39 153464 75 2097 149100 1.39 151197 76 2082 144933 1.42 147015 77 2007 145397 1.36 147404 78 1693 138410 1.21 140103 79 1182 0 100.00 1182