/gscratch/scrubbed/sr320/0924/EPI-153_S4_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-153_S4_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
25991438
Paired-end alignments with a unique best hit
10175887
Pairs without alignments under any condition
13072103
Pairs that did not map uniquely
2743448
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
243457431
Methylated C's in CpG context
8243304
Methylated C's in CHG context
719127
Methylated C's in CHH context
2417271
Methylated C's in Unknown context
27300
Unmethylated C's in CpG context
24883753
Unmethylated C's in CHG context
51417874
Unmethylated C's in CHH context
155776102
Unmethylated C's in Unknown context
496309
Percentage methylation (CpG context)
24.9%
Percentage methylation (CHG context)
1.4%
Percentage methylation (CHH context)
1.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5024225
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5151662
original bottom strand
Deduplication
Alignments analysed
10175887
Unique alignments
6548869
Duplicates removed
3627018
Duplicated alignments were found at 2034097 different positions