CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 53582 127407 29.61 180989 2 52823 126169 29.51 178992 3 52715 125496 29.58 178211 4 51775 125717 29.17 177492 5 51670 124325 29.36 175995 6 50794 123306 29.18 174100 7 50982 127002 28.64 177984 8 52481 125871 29.43 178352 9 51375 128516 28.56 179891 10 51226 127276 28.70 178502 11 51825 125029 29.30 176854 12 50811 121626 29.47 172437 13 50658 121813 29.37 172471 14 51587 120807 29.92 172394 15 51307 120582 29.85 171889 16 50440 122479 29.17 172919 17 49290 120957 28.95 170247 18 49623 121109 29.06 170732 19 50449 123706 28.97 174155 20 50673 121341 29.46 172014 21 50793 121461 29.49 172254 22 51371 123339 29.40 174710 23 50919 121786 29.48 172705 24 50338 120859 29.40 171197 25 51106 120871 29.72 171977 26 51347 121091 29.78 172438 27 50664 119778 29.73 170442 28 50402 119495 29.67 169897 29 51801 120236 30.11 172037 30 50549 121212 29.43 171761 31 50763 121298 29.50 172061 32 50431 124968 28.75 175399 33 49580 119501 29.32 169081 34 48821 118684 29.15 167505 35 48789 115305 29.73 164094 36 47763 114077 29.51 161840 37 48759 114760 29.82 163519 38 48290 114889 29.59 163179 39 48271 114483 29.66 162754 40 47335 114170 29.31 161505 41 47842 113278 29.69 161120 42 46641 114113 29.01 160754 43 46542 112832 29.20 159374 44 46382 112875 29.12 159257 45 46661 111356 29.53 158017 46 47020 111645 29.63 158665 47 46737 109518 29.91 156255 48 45910 109299 29.58 155209 49 45550 108581 29.55 154131 50 45023 108722 29.28 153745 51 44212 106951 29.25 151163 52 43896 106346 29.22 150242 53 43861 104997 29.46 148858 54 43397 104476 29.35 147873 55 42441 104373 28.91 146814 56 42208 102213 29.23 144421 57 42096 101337 29.35 143433 58 42851 102633 29.45 145484 59 42175 100187 29.63 142362 60 40919 100699 28.89 141618 61 40650 99468 29.01 140118 62 39720 98151 28.81 137871 63 40334 99026 28.94 139360 64 39864 99152 28.68 139016 65 39987 97209 29.15 137196 66 39140 95488 29.07 134628 67 37872 94917 28.52 132789 68 38553 94876 28.89 133429 69 37855 92806 28.97 130661 70 37661 93094 28.80 130755 71 37041 91229 28.88 128270 72 36354 90951 28.56 127305 73 36682 91366 28.65 128048 74 36439 90212 28.77 126651 75 35950 88694 28.84 124644 76 35916 90200 28.48 126116 77 34828 86790 28.64 121618 78 32363 81503 28.42 113866 79 25729 63462 28.85 89191 80 33300 80962 29.14 114262 81 30714 80500 27.62 111214 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2904 277559 1.04 280463 2 2995 273824 1.08 276819 3 2909 278667 1.03 281576 4 2675 280108 0.95 282783 5 2749 272828 1.00 275577 6 3040 274370 1.10 277410 7 2844 277947 1.01 280791 8 2729 275625 0.98 278354 9 3234 279006 1.15 282240 10 2903 282515 1.02 285418 11 2852 275943 1.02 278795 12 2732 278817 0.97 281549 13 2750 279621 0.97 282371 14 2630 275879 0.94 278509 15 2851 276685 1.02 279536 16 2631 279363 0.93 281994 17 2633 272938 0.96 275571 18 2761 277288 0.99 280049 19 2750 276964 0.98 279714 20 2724 274079 0.98 276803 21 2772 274122 1.00 276894 22 2917 275777 1.05 278694 23 2781 271298 1.01 274079 24 2870 274404 1.04 277274 25 2872 274778 1.03 277650 26 2822 272227 1.03 275049 27 2967 272244 1.08 275211 28 2903 276727 1.04 279630 29 2853 270751 1.04 273604 30 3064 270623 1.12 273687 31 2879 272418 1.05 275297 32 3010 271286 1.10 274296 33 2949 268782 1.09 271731 34 3129 270604 1.14 273733 35 3053 265751 1.14 268804 36 3101 267883 1.14 270984 37 3068 267077 1.14 270145 38 2974 264382 1.11 267356 39 3108 264560 1.16 267668 40 3088 265215 1.15 268303 41 3154 262744 1.19 265898 42 3188 263954 1.19 267142 43 3127 262346 1.18 265473 44 3257 261848 1.23 265105 45 3443 260434 1.30 263877 46 3143 256159 1.21 259302 47 3129 249728 1.24 252857 48 3329 252081 1.30 255410 49 3170 251709 1.24 254879 50 3119 246106 1.25 249225 51 3124 244937 1.26 248061 52 3109 245737 1.25 248846 53 3086 242332 1.26 245418 54 3149 239994 1.30 243143 55 3131 241480 1.28 244611 56 2872 234562 1.21 237434 57 3188 235242 1.34 238430 58 3013 233132 1.28 236145 59 3047 228251 1.32 231298 60 3032 228426 1.31 231458 61 2998 226238 1.31 229236 62 2870 222375 1.27 225245 63 3094 225260 1.35 228354 64 3129 225966 1.37 229095 65 3178 221209 1.42 224387 66 3133 222942 1.39 226075 67 2992 222264 1.33 225256 68 3246 217242 1.47 220488 69 3048 214875 1.40 217923 70 3011 215593 1.38 218604 71 3022 210754 1.41 213776 72 3107 212429 1.44 215536 73 3264 210077 1.53 213341 74 3124 205385 1.50 208509 75 3185 202747 1.55 205932 76 3132 202141 1.53 205273 77 2979 184548 1.59 187527 78 2671 169348 1.55 172019 79 1681 108719 1.52 110400 80 1999 110294 1.78 112293 81 4255 183887 2.26 188142 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 13340 900222 1.46 913562 2 14582 905105 1.59 919687 3 15901 908163 1.72 924064 4 13233 909145 1.43 922378 5 14095 911771 1.52 925866 6 15918 920670 1.70 936588 7 13572 922142 1.45 935714 8 13677 925544 1.46 939221 9 15823 924734 1.68 940557 10 13678 916945 1.47 930623 11 13987 907046 1.52 921033 12 15192 914328 1.63 929520 13 13515 915707 1.45 929222 14 14736 917938 1.58 932674 15 15832 910439 1.71 926271 16 13644 918951 1.46 932595 17 13859 910816 1.50 924675 18 15487 916498 1.66 931985 19 13163 909605 1.43 922768 20 13679 910644 1.48 924323 21 15328 913522 1.65 928850 22 13887 920928 1.49 934815 23 14397 908867 1.56 923264 24 15268 911552 1.65 926820 25 13938 904005 1.52 917943 26 13578 905343 1.48 918921 27 15088 900416 1.65 915504 28 13231 900131 1.45 913362 29 13582 889171 1.50 902753 30 14806 886801 1.64 901607 31 12996 878289 1.46 891285 32 14016 873715 1.58 887731 33 15007 868336 1.70 883343 34 13125 866475 1.49 879600 35 13692 863262 1.56 876954 36 15180 861928 1.73 877108 37 12798 871846 1.45 884644 38 13510 866508 1.54 880018 39 15198 872331 1.71 887529 40 12611 858048 1.45 870659 41 13753 854712 1.58 868465 42 14773 843786 1.72 858559 43 13051 838717 1.53 851768 44 13921 834043 1.64 847964 45 14614 828563 1.73 843177 46 12667 824571 1.51 837238 47 12930 818857 1.55 831787 48 14247 817273 1.71 831520 49 12249 811903 1.49 824152 50 12771 806431 1.56 819202 51 14020 802162 1.72 816182 52 12337 797352 1.52 809689 53 13472 787089 1.68 800561 54 13651 784000 1.71 797651 55 12308 780526 1.55 792834 56 12313 776394 1.56 788707 57 14011 770069 1.79 784080 58 11575 765088 1.49 776663 59 12156 758195 1.58 770351 60 13427 753690 1.75 767117 61 12009 744658 1.59 756667 62 12590 736573 1.68 749163 63 13489 735256 1.80 748745 64 11914 727731 1.61 739645 65 12438 714052 1.71 726490 66 12887 709717 1.78 722604 67 11674 707586 1.62 719260 68 12197 700017 1.71 712214 69 12637 693740 1.79 706377 70 10952 691229 1.56 702181 71 11653 682477 1.68 694130 72 12459 678720 1.80 691179 73 10902 671802 1.60 682704 74 11243 663201 1.67 674444 75 12028 654561 1.80 666589 76 10487 641848 1.61 652335 77 10598 624456 1.67 635054 78 10848 581278 1.83 592126 79 6539 399402 1.61 405941 80 7019 354512 1.94 361531 81 11066 589414 1.84 600480 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25622 69181 27.03 94803 2 26308 69801 27.37 96109 3 24997 67375 27.06 92372 4 23113 62932 26.86 86045 5 25667 68225 27.34 93892 6 24059 64526 27.16 88585 7 25485 65554 27.99 91039 8 23314 62986 27.02 86300 9 24854 64772 27.73 89626 10 23402 59902 28.09 83304 11 22837 60341 27.46 83178 12 22125 57431 27.81 79556 13 25099 58438 30.05 83537 14 23297 60243 27.89 83540 15 28726 65365 30.53 94091 16 23617 57233 29.21 80850 17 24397 58710 29.36 83107 18 21635 55527 28.04 77162 19 22518 55465 28.88 77983 20 24556 55247 30.77 79803 21 21906 54401 28.71 76307 22 21775 54992 28.37 76767 23 21528 53990 28.51 75518 24 20529 52762 28.01 73291 25 25552 58060 30.56 83612 26 19912 48598 29.06 68510 27 20348 49622 29.08 69970 28 20248 49442 29.05 69690 29 19745 49751 28.41 69496 30 18749 47120 28.46 65869 31 18521 45488 28.93 64009 32 18382 46568 28.30 64950 33 19059 46228 29.19 65287 34 19049 45896 29.33 64945 35 18988 45551 29.42 64539 36 17522 44472 28.26 61994 37 17945 44491 28.74 62436 38 18277 43701 29.49 61978 39 17115 41711 29.09 58826 40 17870 42855 29.43 60725 41 15873 40955 27.93 56828 42 16162 40800 28.37 56962 43 17535 40324 30.31 57859 44 16271 39366 29.24 55637 45 16135 37612 30.02 53747 46 16959 38880 30.37 55839 47 15866 39348 28.74 55214 48 17402 40499 30.05 57901 49 15074 36644 29.15 51718 50 14768 36982 28.54 51750 51 15146 35198 30.09 50344 52 14120 34546 29.01 48666 53 14681 35484 29.27 50165 54 13154 33536 28.17 46690 55 13219 33297 28.42 46516 56 13775 32869 29.53 46644 57 13050 32256 28.80 45306 58 13139 33144 28.39 46283 59 12542 31977 28.17 44519 60 12398 31577 28.19 43975 61 12448 30886 28.73 43334 62 12599 31101 28.83 43700 63 12544 30259 29.31 42803 64 14080 32286 30.37 46366 65 12014 29881 28.68 41895 66 11876 29702 28.56 41578 67 11892 28400 29.51 40292 68 11589 28768 28.72 40357 69 12198 29080 29.55 41278 70 12177 28131 30.21 40308 71 11162 27956 28.53 39118 72 11088 27504 28.73 38592 73 11076 27104 29.01 38180 74 11399 27196 29.53 38595 75 11106 27042 29.11 38148 76 10908 26746 28.97 37654 77 11819 27738 29.88 39557 78 10569 24784 29.90 35353 79 9348 0 100.00 9348 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 2149 148971 1.42 151120 2 1712 163176 1.04 164888 3 1484 164686 0.89 166170 4 1284 145783 0.87 147067 5 1441 147805 0.97 149246 6 1564 155531 1.00 157095 7 1526 146017 1.03 147543 8 1563 139553 1.11 141116 9 1838 147255 1.23 149093 10 1829 144102 1.25 145931 11 1802 135981 1.31 137783 12 1780 139524 1.26 141304 13 1872 163296 1.13 165168 14 1610 134943 1.18 136553 15 1586 141004 1.11 142590 16 1341 141148 0.94 142489 17 1302 128040 1.01 129342 18 1346 136332 0.98 137678 19 1240 124772 0.98 126012 20 1242 124987 0.98 126229 21 1169 122155 0.95 123324 22 1082 115966 0.92 117048 23 1095 117714 0.92 118809 24 1143 117976 0.96 119119 25 1092 111749 0.97 112841 26 1061 111549 0.94 112610 27 1033 115560 0.89 116593 28 1120 109464 1.01 110584 29 1059 113552 0.92 114611 30 1109 109396 1.00 110505 31 980 103352 0.94 104332 32 1002 101706 0.98 102708 33 1163 114234 1.01 115397 34 1064 104922 1.00 105986 35 962 101740 0.94 102702 36 1017 102810 0.98 103827 37 963 97608 0.98 98571 38 1061 95039 1.10 96100 39 972 98819 0.97 99791 40 1061 95359 1.10 96420 41 929 95829 0.96 96758 42 1010 97820 1.02 98830 43 988 95908 1.02 96896 44 832 89419 0.92 90251 45 850 93110 0.90 93960 46 823 86435 0.94 87258 47 939 93474 0.99 94413 48 807 89794 0.89 90601 49 864 89012 0.96 89876 50 896 88518 1.00 89414 51 880 90239 0.97 91119 52 865 83542 1.02 84407 53 807 82501 0.97 83308 54 829 85796 0.96 86625 55 808 81925 0.98 82733 56 751 79026 0.94 79777 57 780 81739 0.95 82519 58 776 76502 1.00 77278 59 729 77392 0.93 78121 60 720 75047 0.95 75767 61 700 73264 0.95 73964 62 677 72344 0.93 73021 63 741 73009 1.00 73750 64 655 69627 0.93 70282 65 754 77375 0.97 78129 66 672 69626 0.96 70298 67 675 68762 0.97 69437 68 656 65931 0.99 66587 69 707 69093 1.01 69800 70 726 67944 1.06 68670 71 720 71012 1.00 71732 72 659 66841 0.98 67500 73 596 64137 0.92 64733 74 675 63402 1.05 64077 75 673 65009 1.02 65682 76 670 61796 1.07 62466 77 642 60790 1.05 61432 78 503 60066 0.83 60569 79 378 0 100.00 378 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7978 545315 1.44 553293 2 7654 526111 1.43 533765 3 7472 518650 1.42 526122 4 7281 499654 1.44 506935 5 7414 496241 1.47 503655 6 7222 491904 1.45 499126 7 7713 524940 1.45 532653 8 7186 494868 1.43 502054 9 7191 483892 1.46 491083 10 7403 470978 1.55 478381 11 7009 463562 1.49 470571 12 7196 451260 1.57 458456 13 7210 445619 1.59 452829 14 7085 442710 1.58 449795 15 7609 455265 1.64 462874 16 6765 450073 1.48 456838 17 6670 447892 1.47 454562 18 6748 471260 1.41 478008 19 6328 427283 1.46 433611 20 6351 448667 1.40 455018 21 6075 421263 1.42 427338 22 6202 431635 1.42 437837 23 5988 409492 1.44 415480 24 5854 405776 1.42 411630 25 6030 407282 1.46 413312 26 5735 411389 1.37 417124 27 5609 401333 1.38 406942 28 5675 394712 1.42 400387 29 5397 402478 1.32 407875 30 5554 392467 1.40 398021 31 5339 382951 1.38 388290 32 5104 364965 1.38 370069 33 5014 364252 1.36 369266 34 4843 357237 1.34 362080 35 5151 369276 1.38 374427 36 4687 354095 1.31 358782 37 4828 367052 1.30 371880 38 4701 350197 1.32 354898 39 4674 336852 1.37 341526 40 4731 350352 1.33 355083 41 4462 333237 1.32 337699 42 4429 329338 1.33 333767 43 4406 332659 1.31 337065 44 4368 319991 1.35 324359 45 4261 325594 1.29 329855 46 4335 312530 1.37 316865 47 4037 314465 1.27 318502 48 4367 325273 1.32 329640 49 4145 312910 1.31 317055 50 3946 300164 1.30 304110 51 4134 298479 1.37 302613 52 3957 297029 1.31 300986 53 3852 293283 1.30 297135 54 3884 294789 1.30 298673 55 3736 292539 1.26 296275 56 3781 280224 1.33 284005 57 3783 278715 1.34 282498 58 3813 280105 1.34 283918 59 3570 285212 1.24 288782 60 3731 272582 1.35 276313 61 3877 272617 1.40 276494 62 3627 268945 1.33 272572 63 3550 266817 1.31 270367 64 3704 263385 1.39 267089 65 3424 259014 1.30 262438 66 3462 258545 1.32 262007 67 3397 256151 1.31 259548 68 3272 248169 1.30 251441 69 3330 247465 1.33 250795 70 3319 245822 1.33 249141 71 3214 244320 1.30 247534 72 3141 242239 1.28 245380 73 3109 239423 1.28 242532 74 3080 235653 1.29 238733 75 3014 231243 1.29 234257 76 2821 226293 1.23 229114 77 2853 226535 1.24 229388 78 2388 215505 1.10 217893 79 1699 0 100.00 1699