/gscratch/scrubbed/sr320/0924/EPI-152_S3_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-152_S3_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
29841619
Paired-end alignments with a unique best hit
11530248
Pairs without alignments under any condition
15423787
Pairs that did not map uniquely
2887584
Genomic sequence context not extractable (edges of chromosomes)
1
Cytosine Methylation
Total C's analysed
281731297
Methylated C's in CpG context
9936392
Methylated C's in CHG context
780374
Methylated C's in CHH context
2830980
Methylated C's in Unknown context
32415
Unmethylated C's in CpG context
26480973
Unmethylated C's in CHG context
57771725
Unmethylated C's in CHH context
183930853
Unmethylated C's in Unknown context
575301
Percentage methylation (CpG context)
27.3%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
1.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5701659
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
5828588
original bottom strand
Deduplication
Alignments analysed
11530247
Unique alignments
8278241
Duplicates removed
3252006
Duplicated alignments were found at 1988314 different positions
