CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 45536 113697 28.60 159233 2 44825 112093 28.57 156918 3 44521 112230 28.40 156751 4 44698 112990 28.35 157688 5 43606 111255 28.16 154861 6 44032 111334 28.34 155366 7 43885 113703 27.85 157588 8 44988 113416 28.40 158404 9 43900 112877 28.00 156777 10 43280 113234 27.65 156514 11 44628 111654 28.56 156282 12 43267 109728 28.28 152995 13 43634 110595 28.29 154229 14 44751 110519 28.82 155270 15 43660 109912 28.43 153572 16 43265 110985 28.05 154250 17 42256 109296 27.88 151552 18 42014 107947 28.02 149961 19 43479 110694 28.20 154173 20 43544 108895 28.56 152439 21 42757 109415 28.10 152172 22 44164 111875 28.30 156039 23 43353 109590 28.35 152943 24 42873 108813 28.26 151686 25 43618 108478 28.68 152096 26 43459 108882 28.53 152341 27 43265 107033 28.79 150298 28 42545 107671 28.32 150216 29 44080 108146 28.96 152226 30 42690 108010 28.33 150700 31 42925 108046 28.43 150971 32 42891 110616 27.94 153507 33 42204 106398 28.40 148602 34 42006 105319 28.51 147325 35 41229 104383 28.31 145612 36 40642 103446 28.21 144088 37 41189 104139 28.34 145328 38 40731 104029 28.14 144760 39 40986 103123 28.44 144109 40 40245 103353 28.03 143598 41 40878 101956 28.62 142834 42 39446 102412 27.81 141858 43 39661 100785 28.24 140446 44 39047 100654 27.95 139701 45 39088 100313 28.04 139401 46 39503 100724 28.17 140227 47 39178 98794 28.40 137972 48 38581 98436 28.16 137017 49 38319 98436 28.02 136755 50 38046 97931 27.98 135977 51 36957 95912 27.81 132869 52 36796 95798 27.75 132594 53 36543 94404 27.91 130947 54 36654 94493 27.95 131147 55 35424 94049 27.36 129473 56 35542 93158 27.62 128700 57 35878 92680 27.91 128558 58 35969 92697 27.96 128666 59 35324 92241 27.69 127565 60 34578 91114 27.51 125692 61 34142 91150 27.25 125292 62 33209 88986 27.18 122195 63 33877 89282 27.51 123159 64 33602 88952 27.42 122554 65 33180 88562 27.25 121742 66 32348 86134 27.30 118482 67 31561 85896 26.87 117457 68 31903 85552 27.16 117455 69 31679 83799 27.43 115478 70 31253 84648 26.97 115901 71 30948 82591 27.26 113539 72 30340 82461 26.90 112801 73 30414 82241 27.00 112655 74 29937 82021 26.74 111958 75 29744 80533 26.97 110277 76 29204 80805 26.55 110009 77 28483 78034 26.74 106517 78 26889 72794 26.97 99683 79 21160 57285 26.97 78445 80 27545 72399 27.56 99944 81 24680 72188 25.48 96868 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 2380 243730 0.97 246110 2 2488 240675 1.02 243163 3 2605 246033 1.05 248638 4 2362 245642 0.95 248004 5 2423 239328 1.00 241751 6 2710 243114 1.10 245824 7 2504 244500 1.01 247004 8 2441 242717 1.00 245158 9 2659 245990 1.07 248649 10 2389 249656 0.95 252045 11 2390 243136 0.97 245526 12 2450 245354 0.99 247804 13 2427 247273 0.97 249700 14 2290 243390 0.93 245680 15 2487 243919 1.01 246406 16 2372 246438 0.95 248810 17 2446 238892 1.01 241338 18 2404 244905 0.97 247309 19 2391 244203 0.97 246594 20 2470 242490 1.01 244960 21 2496 243262 1.02 245758 22 2530 243930 1.03 246460 23 2559 239033 1.06 241592 24 2545 241896 1.04 244441 25 2528 241959 1.03 244487 26 2579 239714 1.06 242293 27 2677 238804 1.11 241481 28 2618 243816 1.06 246434 29 2502 238633 1.04 241135 30 2767 237763 1.15 240530 31 2610 240222 1.07 242832 32 2711 239368 1.12 242079 33 2716 235099 1.14 237815 34 2814 239329 1.16 242143 35 2675 234925 1.13 237600 36 2697 235920 1.13 238617 37 2725 234354 1.15 237079 38 2615 231294 1.12 233909 39 2777 232336 1.18 235113 40 2640 232605 1.12 235245 41 2575 229591 1.11 232166 42 2858 230198 1.23 233056 43 2812 227823 1.22 230635 44 2738 226958 1.19 229696 45 2947 226938 1.28 229885 46 2700 223417 1.19 226117 47 2749 218134 1.24 220883 48 3051 220315 1.37 223366 49 2817 219223 1.27 222040 50 2817 214172 1.30 216989 51 2696 214885 1.24 217581 52 2786 214892 1.28 217678 53 2696 212599 1.25 215295 54 2740 210760 1.28 213500 55 2674 210175 1.26 212849 56 2697 205856 1.29 208553 57 2697 206072 1.29 208769 58 2744 204500 1.32 207244 59 2645 199473 1.31 202118 60 2587 200646 1.27 203233 61 2723 198198 1.36 200921 62 2584 193951 1.31 196535 63 2659 197019 1.33 199678 64 2763 196807 1.38 199570 65 2878 192425 1.47 195303 66 2723 192333 1.40 195056 67 2643 194178 1.34 196821 68 2918 188925 1.52 191843 69 2670 188187 1.40 190857 70 2593 187708 1.36 190301 71 2595 183836 1.39 186431 72 2670 184713 1.42 187383 73 2842 183121 1.53 185963 74 2676 179140 1.47 181816 75 2718 177713 1.51 180431 76 2686 175747 1.51 178433 77 2610 160785 1.60 163395 78 2316 147795 1.54 150111 79 1601 95594 1.65 97195 80 1786 96320 1.82 98106 81 3444 159749 2.11 163193 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 11680 762109 1.51 773789 2 12589 765054 1.62 777643 3 13853 763364 1.78 777217 4 11682 763572 1.51 775254 5 12563 767492 1.61 780055 6 13875 773633 1.76 787508 7 11723 777404 1.49 789127 8 11859 781954 1.49 793813 9 13938 779201 1.76 793139 10 11968 774705 1.52 786673 11 12279 767134 1.58 779413 12 13647 768956 1.74 782603 13 12055 769778 1.54 781833 14 13094 775142 1.66 788236 15 13945 769142 1.78 783087 16 11816 777344 1.50 789160 17 12107 769359 1.55 781466 18 13795 774111 1.75 787906 19 11552 769209 1.48 780761 20 11771 765661 1.51 777432 21 13686 770540 1.75 784226 22 12151 773334 1.55 785485 23 12878 763310 1.66 776188 24 13634 768257 1.74 781891 25 12148 760633 1.57 772781 26 11988 763320 1.55 775308 27 13465 759668 1.74 773133 28 11637 756863 1.51 768500 29 11881 749968 1.56 761849 30 13152 747776 1.73 760928 31 11499 742066 1.53 753565 32 12142 737998 1.62 750140 33 13208 732948 1.77 746156 34 11715 732064 1.58 743779 35 11877 725548 1.61 737425 36 13313 725059 1.80 738372 37 11357 729364 1.53 740721 38 11633 725629 1.58 737262 39 13411 726924 1.81 740335 40 11330 722620 1.54 733950 41 11759 716967 1.61 728726 42 12992 708624 1.80 721616 43 11158 705719 1.56 716877 44 11948 699529 1.68 711477 45 12826 696192 1.81 709018 46 11153 693313 1.58 704466 47 11200 689618 1.60 700818 48 12715 687552 1.82 700267 49 10815 683928 1.56 694743 50 10889 677567 1.58 688456 51 12391 674811 1.80 687202 52 10739 673459 1.57 684198 53 11571 662277 1.72 673848 54 12227 660626 1.82 672853 55 10726 658155 1.60 668881 56 10593 654310 1.59 664903 57 12207 648506 1.85 660713 58 10237 643206 1.57 653443 59 10658 641800 1.63 652458 60 11898 635799 1.84 647697 61 10532 627927 1.65 638459 62 10935 620560 1.73 631495 63 11851 620460 1.87 632311 64 10491 612662 1.68 623153 65 10880 603760 1.77 614640 66 11525 597731 1.89 609256 67 10120 594301 1.67 604421 68 10526 588612 1.76 599138 69 11103 581783 1.87 592886 70 9669 579864 1.64 589533 71 10041 571682 1.73 581723 72 10779 567678 1.86 578457 73 9540 563606 1.66 573146 74 9616 554357 1.71 563973 75 10566 547620 1.89 558186 76 8974 536000 1.65 544974 77 8960 521756 1.69 530716 78 9169 483843 1.86 493012 79 5603 335141 1.64 340744 80 5993 297649 1.97 303642 81 9538 491705 1.90 501243 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 21090 62014 25.38 83104 2 21065 62336 25.26 83401 3 20401 60235 25.30 80636 4 18819 56884 24.86 75703 5 21170 59977 26.09 81147 6 19480 57338 25.36 76818 7 21010 57560 26.74 78570 8 19172 55366 25.72 74538 9 19753 57117 25.70 76870 10 19356 53697 26.50 73053 11 18492 54178 25.45 72670 12 18072 50795 26.24 68867 13 20579 52282 28.24 72861 14 19468 54276 26.40 73744 15 23025 58098 28.38 81123 16 19499 51302 27.54 70801 17 19903 52294 27.57 72197 18 17647 50110 26.04 67757 19 18480 49264 27.28 67744 20 20014 48699 29.13 68713 21 17884 48486 26.95 66370 22 17962 49669 26.56 67631 23 17600 47904 26.87 65504 24 16712 47227 26.14 63939 25 20298 51423 28.30 71721 26 16308 43691 27.18 59999 27 16654 44546 27.21 61200 28 16508 44487 27.06 60995 29 16122 44738 26.49 60860 30 15458 42062 26.87 57520 31 15335 41204 27.12 56539 32 15143 42456 26.29 57599 33 15896 41510 27.69 57406 34 15061 41538 26.61 56599 35 15483 40894 27.46 56377 36 14497 39716 26.74 54213 37 14976 40863 26.82 55839 38 14719 39774 27.01 54493 39 14331 37552 27.62 51883 40 14463 38029 27.55 52492 41 13134 36333 26.55 49467 42 13005 35997 26.54 49002 43 14071 35569 28.35 49640 44 13042 34964 27.17 48006 45 12950 33754 27.73 46704 46 13445 34689 27.93 48134 47 12858 35557 26.56 48415 48 13937 36025 27.90 49962 49 12177 32430 27.30 44607 50 11845 32385 26.78 44230 51 12003 31558 27.55 43561 52 11788 30505 27.87 42293 53 11689 31511 27.06 43200 54 10411 30013 25.75 40424 55 10581 30061 26.03 40642 56 11134 29150 27.64 40284 57 10581 29082 26.68 39663 58 10714 29014 26.97 39728 59 10303 28660 26.44 38963 60 10268 27781 26.99 38049 61 9937 27894 26.27 37831 62 10177 28092 26.59 38269 63 10270 26786 27.71 37056 64 11394 29541 27.83 40935 65 9634 26612 26.58 36246 66 9499 26468 26.41 35967 67 9373 25158 27.14 34531 68 9511 25053 27.52 34564 69 9950 26197 27.53 36147 70 9905 25743 27.79 35648 71 9115 24963 26.75 34078 72 8833 24216 26.73 33049 73 9052 23934 27.44 32986 74 9337 24330 27.73 33667 75 8970 23716 27.44 32686 76 8920 23524 27.49 32444 77 9571 25105 27.60 34676 78 8361 21968 27.57 30329 79 7622 0 100.00 7622 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1856 128857 1.42 130713 2 1448 140931 1.02 142379 3 1398 141339 0.98 142737 4 1192 126375 0.93 127567 5 1264 128123 0.98 129387 6 1401 134096 1.03 135497 7 1321 124683 1.05 126004 8 1275 119489 1.06 120764 9 1517 127909 1.17 129426 10 1456 122574 1.17 124030 11 1485 118193 1.24 119678 12 1436 120357 1.18 121793 13 1621 138369 1.16 139990 14 1416 116446 1.20 117862 15 1273 122741 1.03 124014 16 1217 120850 1.00 122067 17 1049 110855 0.94 111904 18 1143 118142 0.96 119285 19 1085 108507 0.99 109592 20 1075 107146 0.99 108221 21 975 105045 0.92 106020 22 1022 99646 1.02 100668 23 963 102593 0.93 103556 24 935 101775 0.91 102710 25 907 96499 0.93 97406 26 991 96563 1.02 97554 27 954 99152 0.95 100106 28 928 93993 0.98 94921 29 914 98636 0.92 99550 30 974 94710 1.02 95684 31 920 89283 1.02 90203 32 875 86907 1.00 87782 33 972 97847 0.98 98819 34 870 89200 0.97 90070 35 867 88123 0.97 88990 36 924 87491 1.05 88415 37 913 83524 1.08 84437 38 851 81864 1.03 82715 39 836 85101 0.97 85937 40 916 82732 1.10 83648 41 860 82537 1.03 83397 42 828 83757 0.98 84585 43 875 82253 1.05 83128 44 711 77013 0.91 77724 45 803 79362 1.00 80165 46 713 73523 0.96 74236 47 809 79511 1.01 80320 48 713 76587 0.92 77300 49 761 75686 1.00 76447 50 735 75349 0.97 76084 51 734 77153 0.94 77887 52 715 71288 0.99 72003 53 688 69493 0.98 70181 54 703 73061 0.95 73764 55 672 68892 0.97 69564 56 602 67279 0.89 67881 57 731 70353 1.03 71084 58 628 64431 0.97 65059 59 676 65075 1.03 65751 60 615 63796 0.95 64411 61 599 61945 0.96 62544 62 623 60618 1.02 61241 63 628 62516 0.99 63144 64 617 59200 1.03 59817 65 630 66377 0.94 67007 66 554 59304 0.93 59858 67 581 59452 0.97 60033 68 552 56330 0.97 56882 69 589 59069 0.99 59658 70 614 58141 1.05 58755 71 575 60947 0.93 61522 72 580 57099 1.01 57679 73 648 54901 1.17 55549 74 571 53661 1.05 54232 75 564 55291 1.01 55855 76 549 51778 1.05 52327 77 528 51730 1.01 52258 78 442 51712 0.85 52154 79 315 0 100.00 315 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 7039 454102 1.53 461141 2 6661 438601 1.50 445262 3 6421 431010 1.47 437431 4 5983 415221 1.42 421204 5 6428 413235 1.53 419663 6 6300 409611 1.51 415911 7 6470 437557 1.46 444027 8 6090 412265 1.46 418355 9 6188 403156 1.51 409344 10 6479 393186 1.62 399665 11 6194 385265 1.58 391459 12 6181 374208 1.62 380389 13 6117 369741 1.63 375858 14 6104 366865 1.64 372969 15 6325 379440 1.64 385765 16 5629 373333 1.49 378962 17 5578 370710 1.48 376288 18 5623 388113 1.43 393736 19 5471 354246 1.52 359717 20 5406 372335 1.43 377741 21 5137 349503 1.45 354640 22 5152 357259 1.42 362411 23 5142 338151 1.50 343293 24 4927 334116 1.45 339043 25 4948 334648 1.46 339596 26 4822 337964 1.41 342786 27 4761 331125 1.42 335886 28 4836 324170 1.47 329006 29 4584 330609 1.37 335193 30 4477 322319 1.37 326796 31 4513 313571 1.42 318084 32 4298 300545 1.41 304843 33 4159 299089 1.37 303248 34 4041 292606 1.36 296647 35 4173 303542 1.36 307715 36 4082 291860 1.38 295942 37 4087 300811 1.34 304898 38 3854 288545 1.32 292399 39 3939 277651 1.40 281590 40 4022 286932 1.38 290954 41 3804 273168 1.37 276972 42 3858 271552 1.40 275410 43 3775 273254 1.36 277029 44 3739 264489 1.39 268228 45 3618 267761 1.33 271379 46 3605 258473 1.38 262078 47 3506 258187 1.34 261693 48 3622 266126 1.34 269748 49 3545 258387 1.35 261932 50 3441 246750 1.38 250191 51 3280 244808 1.32 248088 52 3402 243501 1.38 246903 53 3387 240238 1.39 243625 54 3154 241247 1.29 244401 55 3261 239710 1.34 242971 56 3059 230543 1.31 233602 57 3244 228212 1.40 231456 58 3170 228979 1.37 232149 59 3085 232781 1.31 235866 60 3108 224204 1.37 227312 61 3184 224753 1.40 227937 62 3049 220521 1.36 223570 63 2983 218176 1.35 221159 64 3033 216273 1.38 219306 65 2874 213379 1.33 216253 66 2815 211987 1.31 214802 67 2785 210248 1.31 213033 68 2732 202830 1.33 205562 69 2680 202063 1.31 204743 70 2759 199860 1.36 202619 71 2700 199458 1.34 202158 72 2519 196256 1.27 198775 73 2652 194167 1.35 196819 74 2502 193220 1.28 195722 75 2491 189365 1.30 191856 76 2413 185291 1.29 187704 77 2294 184615 1.23 186909 78 2013 175809 1.13 177822 79 1413 0 100.00 1413