/gscratch/scrubbed/sr320/0924/EPI-151_S2_L002_R1_001_val_1.20bp-trim.fq.gz and /gscratch/scrubbed/sr320/0924/EPI-151_S2_L002_R2_001_val_2.20bp-trim.fq.gz
Data processed at 07:08 on 2019-09-26
Alignment Stats
Sequence pairs analysed in total
24493406
Paired-end alignments with a unique best hit
9735627
Pairs without alignments under any condition
12299173
Pairs that did not map uniquely
2458606
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
238015641
Methylated C's in CpG context
8357504
Methylated C's in CHG context
650086
Methylated C's in CHH context
2439382
Methylated C's in Unknown context
25289
Unmethylated C's in CpG context
23921725
Unmethylated C's in CHG context
50258052
Unmethylated C's in CHH context
152388892
Unmethylated C's in Unknown context
480225
Percentage methylation (CpG context)
25.9%
Percentage methylation (CHG context)
1.3%
Percentage methylation (CHH context)
1.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
4781374
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
4954253
original bottom strand
Deduplication
Alignments analysed
9735627
Unique alignments
7070246
Duplicates removed
2665381
Duplicated alignments were found at 1650571 different positions