/gscratch/srlab/sr320/data/caligus/Sealice_F1_S20_L001_R1_001_val_1_val_1.fq.gz and /gscratch/srlab/sr320/data/caligus/Sealice_F1_S20_L001_R2_001_val_2_val_2.fq.gz
Data processed at 15:59 on 2019-09-23
Alignment Stats
Sequence pairs analysed in total
112799336
Paired-end alignments with a unique best hit
532093
Pairs without alignments under any condition
112048372
Pairs that did not map uniquely
218871
Genomic sequence context not extractable (edges of chromosomes)
0
Cytosine Methylation
Total C's analysed
6792462
Methylated C's in CpG context
44803
Methylated C's in CHG context
37016
Methylated C's in CHH context
2099417
Methylated C's in Unknown context
32004
Unmethylated C's in CpG context
376529
Unmethylated C's in CHG context
446628
Unmethylated C's in CHH context
3788069
Unmethylated C's in Unknown context
47091
Percentage methylation (CpG context)
10.6%
Percentage methylation (CHG context)
7.7%
Percentage methylation (CHH context)
35.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
270168
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
261925
original bottom strand
Deduplication
Alignments analysed
532093
Unique alignments
354439
Duplicates removed
177654
Duplicated alignments were found at 90304 different positions
