Alignment Stats
| Sequences analysed in total |
605809374 |
| Single-end alignments with a unique best hit |
713 |
| Sequences without alignments under any condition |
605808661 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
5561 |
| Methylated C's in CpG context |
187 |
| Methylated C's in CHG context |
121 |
| Methylated C's in CHH context |
1287 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
197 |
| Unmethylated C's in CHG context |
224 |
| Unmethylated C's in CHH context |
3545 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
48.7% |
| Percentage methylation (CHG context) |
35.1% |
| Percentage methylation (CHH context) |
26.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
101 |
original top strand |
| CTOT |
220 |
complementary to original top strand |
| CTOB |
253 |
complementary to original bottom strand |
| OB |
139 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
713 |
| Unique alignments |
306 |
| Duplicates removed |
407 |
| Duplicated alignments were found at 79 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2096 |
| Methylated C's in CpG context |
142 |
| Methylated C's in CHG context |
107 |
| Methylated C's in CHH context |
580 |
| Unmethylated C's in CpG context |
96 |
| Unmethylated C's in CHG context |
144 |
| Unmethylated C's in CHH context |
1027 |
| Percentage methylation (CpG context) |
59.7% |
| Percentage methylation (CHG context) |
42.6% |
| Percentage methylation (CHH context) |
36.1% |
|
|
M-Bias Plot
