zr1394_all_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 306 lines in total Total number of methylation call strings processed: 306 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2096 Total methylated C's in CpG context: 142 Total methylated C's in CHG context: 107 Total methylated C's in CHH context: 580 Total C to T conversions in CpG context: 96 Total C to T conversions in CHG context: 144 Total C to T conversions in CHH context: 1027 C methylated in CpG context: 59.7% C methylated in CHG context: 42.6% C methylated in CHH context: 36.1%