Alignment Stats
| Sequences analysed in total |
77350922 |
| Single-end alignments with a unique best hit |
74 |
| Sequences without alignments under any condition |
77350848 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
604 |
| Methylated C's in CpG context |
22 |
| Methylated C's in CHG context |
16 |
| Methylated C's in CHH context |
124 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
30 |
| Unmethylated C's in CHG context |
24 |
| Unmethylated C's in CHH context |
388 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
42.3% |
| Percentage methylation (CHG context) |
40.0% |
| Percentage methylation (CHH context) |
24.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
15 |
original top strand |
| CTOT |
21 |
complementary to original top strand |
| CTOB |
22 |
complementary to original bottom strand |
| OB |
16 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
74 |
| Unique alignments |
58 |
| Duplicates removed |
16 |
| Duplicated alignments were found at 8 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
448 |
| Methylated C's in CpG context |
19 |
| Methylated C's in CHG context |
15 |
| Methylated C's in CHH context |
95 |
| Unmethylated C's in CpG context |
30 |
| Unmethylated C's in CHG context |
21 |
| Unmethylated C's in CHH context |
268 |
| Percentage methylation (CpG context) |
38.8% |
| Percentage methylation (CHG context) |
41.7% |
| Percentage methylation (CHH context) |
26.2% |
|
|
M-Bias Plot
