Alignment Stats
| Sequences analysed in total |
38697189 |
| Single-end alignments with a unique best hit |
33 |
| Sequences without alignments under any condition |
38697156 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
244 |
| Methylated C's in CpG context |
8 |
| Methylated C's in CHG context |
8 |
| Methylated C's in CHH context |
51 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
5 |
| Unmethylated C's in CHG context |
10 |
| Unmethylated C's in CHH context |
162 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
61.5% |
| Percentage methylation (CHG context) |
44.4% |
| Percentage methylation (CHH context) |
23.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
9 |
original top strand |
| CTOT |
6 |
complementary to original top strand |
| CTOB |
13 |
complementary to original bottom strand |
| OB |
5 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
33 |
| Unique alignments |
28 |
| Duplicates removed |
5 |
| Duplicated alignments were found at 4 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
195 |
| Methylated C's in CpG context |
8 |
| Methylated C's in CHG context |
7 |
| Methylated C's in CHH context |
45 |
| Unmethylated C's in CpG context |
5 |
| Unmethylated C's in CHG context |
9 |
| Unmethylated C's in CHH context |
121 |
| Percentage methylation (CpG context) |
61.5% |
| Percentage methylation (CHG context) |
43.8% |
| Percentage methylation (CHH context) |
27.1% |
|
|
M-Bias Plot
