Alignment Stats
| Sequences analysed in total |
49730113 |
| Single-end alignments with a unique best hit |
52 |
| Sequences without alignments under any condition |
49730061 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
398 |
| Methylated C's in CpG context |
9 |
| Methylated C's in CHG context |
6 |
| Methylated C's in CHH context |
84 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
20 |
| Unmethylated C's in CHG context |
17 |
| Unmethylated C's in CHH context |
262 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
31.0% |
| Percentage methylation (CHG context) |
26.1% |
| Percentage methylation (CHH context) |
24.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
13 |
original top strand |
| CTOT |
11 |
complementary to original top strand |
| CTOB |
13 |
complementary to original bottom strand |
| OB |
15 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
52 |
| Unique alignments |
43 |
| Duplicates removed |
9 |
| Duplicated alignments were found at 7 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
320 |
| Methylated C's in CpG context |
9 |
| Methylated C's in CHG context |
6 |
| Methylated C's in CHH context |
71 |
| Unmethylated C's in CpG context |
16 |
| Unmethylated C's in CHG context |
13 |
| Unmethylated C's in CHH context |
205 |
| Percentage methylation (CpG context) |
36.0% |
| Percentage methylation (CHG context) |
31.6% |
| Percentage methylation (CHH context) |
25.7% |
|
|
M-Bias Plot
|
