Alignment Stats
| Sequences analysed in total |
46455148 |
| Single-end alignments with a unique best hit |
49 |
| Sequences without alignments under any condition |
46455099 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
386 |
| Methylated C's in CpG context |
26 |
| Methylated C's in CHG context |
20 |
| Methylated C's in CHH context |
110 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
13 |
| Unmethylated C's in CHG context |
15 |
| Unmethylated C's in CHH context |
202 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
66.7% |
| Percentage methylation (CHG context) |
57.1% |
| Percentage methylation (CHH context) |
35.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
5 |
original top strand |
| CTOT |
12 |
complementary to original top strand |
| CTOB |
21 |
complementary to original bottom strand |
| OB |
11 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
49 |
| Unique alignments |
39 |
| Duplicates removed |
10 |
| Duplicated alignments were found at 5 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
289 |
| Methylated C's in CpG context |
26 |
| Methylated C's in CHG context |
19 |
| Methylated C's in CHH context |
82 |
| Unmethylated C's in CpG context |
13 |
| Unmethylated C's in CHG context |
14 |
| Unmethylated C's in CHH context |
135 |
| Percentage methylation (CpG context) |
66.7% |
| Percentage methylation (CHG context) |
57.6% |
| Percentage methylation (CHH context) |
37.8% |
|
|
M-Bias Plot
