zr1394_6_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 39 lines in total Total number of methylation call strings processed: 39 Final Cytosine Methylation Report ================================= Total number of C's analysed: 289 Total methylated C's in CpG context: 26 Total methylated C's in CHG context: 19 Total methylated C's in CHH context: 82 Total C to T conversions in CpG context: 13 Total C to T conversions in CHG context: 14 Total C to T conversions in CHH context: 135 C methylated in CpG context: 66.7% C methylated in CHG context: 57.6% C methylated in CHH context: 37.8%