Alignment Stats
| Sequences analysed in total |
47401736 |
| Single-end alignments with a unique best hit |
64 |
| Sequences without alignments under any condition |
47401672 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
497 |
| Methylated C's in CpG context |
21 |
| Methylated C's in CHG context |
25 |
| Methylated C's in CHH context |
156 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
18 |
| Unmethylated C's in CHG context |
21 |
| Unmethylated C's in CHH context |
256 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
53.8% |
| Percentage methylation (CHG context) |
54.3% |
| Percentage methylation (CHH context) |
37.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
8 |
original top strand |
| CTOT |
14 |
complementary to original top strand |
| CTOB |
30 |
complementary to original bottom strand |
| OB |
12 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
64 |
| Unique alignments |
53 |
| Duplicates removed |
11 |
| Duplicated alignments were found at 6 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
394 |
| Methylated C's in CpG context |
21 |
| Methylated C's in CHG context |
24 |
| Methylated C's in CHH context |
133 |
| Unmethylated C's in CpG context |
12 |
| Unmethylated C's in CHG context |
15 |
| Unmethylated C's in CHH context |
189 |
| Percentage methylation (CpG context) |
63.6% |
| Percentage methylation (CHG context) |
61.5% |
| Percentage methylation (CHH context) |
41.3% |
|
|
M-Bias Plot
