zr1394_5_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 53 lines in total Total number of methylation call strings processed: 53 Final Cytosine Methylation Report ================================= Total number of C's analysed: 394 Total methylated C's in CpG context: 21 Total methylated C's in CHG context: 24 Total methylated C's in CHH context: 133 Total C to T conversions in CpG context: 12 Total C to T conversions in CHG context: 15 Total C to T conversions in CHH context: 189 C methylated in CpG context: 63.6% C methylated in CHG context: 61.5% C methylated in CHH context: 41.3%