Alignment Stats
| Sequences analysed in total |
44905078 |
| Single-end alignments with a unique best hit |
70 |
| Sequences without alignments under any condition |
44905008 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
562 |
| Methylated C's in CpG context |
12 |
| Methylated C's in CHG context |
13 |
| Methylated C's in CHH context |
123 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
21 |
| Unmethylated C's in CHG context |
19 |
| Unmethylated C's in CHH context |
374 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
36.4% |
| Percentage methylation (CHG context) |
40.6% |
| Percentage methylation (CHH context) |
24.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
17 |
original top strand |
| CTOT |
19 |
complementary to original top strand |
| CTOB |
25 |
complementary to original bottom strand |
| OB |
9 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
70 |
| Unique alignments |
47 |
| Duplicates removed |
23 |
| Duplicated alignments were found at 10 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
347 |
| Methylated C's in CpG context |
12 |
| Methylated C's in CHG context |
9 |
| Methylated C's in CHH context |
80 |
| Unmethylated C's in CpG context |
19 |
| Unmethylated C's in CHG context |
14 |
| Unmethylated C's in CHH context |
213 |
| Percentage methylation (CpG context) |
38.7% |
| Percentage methylation (CHG context) |
39.1% |
| Percentage methylation (CHH context) |
27.3% |
|
|
M-Bias Plot
