Alignment Stats
| Sequences analysed in total |
48376729 |
| Single-end alignments with a unique best hit |
59 |
| Sequences without alignments under any condition |
48376670 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
444 |
| Methylated C's in CpG context |
15 |
| Methylated C's in CHG context |
22 |
| Methylated C's in CHH context |
118 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
27 |
| Unmethylated C's in CHG context |
19 |
| Unmethylated C's in CHH context |
243 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
35.7% |
| Percentage methylation (CHG context) |
53.7% |
| Percentage methylation (CHH context) |
32.7% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
8 |
original top strand |
| CTOT |
23 |
complementary to original top strand |
| CTOB |
13 |
complementary to original bottom strand |
| OB |
15 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
59 |
| Unique alignments |
52 |
| Duplicates removed |
7 |
| Duplicated alignments were found at 4 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
378 |
| Methylated C's in CpG context |
14 |
| Methylated C's in CHG context |
22 |
| Methylated C's in CHH context |
111 |
| Unmethylated C's in CpG context |
24 |
| Unmethylated C's in CHG context |
17 |
| Unmethylated C's in CHH context |
190 |
| Percentage methylation (CpG context) |
36.8% |
| Percentage methylation (CHG context) |
56.4% |
| Percentage methylation (CHH context) |
36.9% |
|
|
M-Bias Plot
