Alignment Stats
| Sequences analysed in total |
46105140 |
| Single-end alignments with a unique best hit |
55 |
| Sequences without alignments under any condition |
46105085 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
395 |
| Methylated C's in CpG context |
19 |
| Methylated C's in CHG context |
17 |
| Methylated C's in CHH context |
114 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
20 |
| Unmethylated C's in CHG context |
16 |
| Unmethylated C's in CHH context |
209 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
48.7% |
| Percentage methylation (CHG context) |
51.5% |
| Percentage methylation (CHH context) |
35.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
12 |
original top strand |
| CTOT |
14 |
complementary to original top strand |
| CTOB |
17 |
complementary to original bottom strand |
| OB |
12 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
55 |
| Unique alignments |
48 |
| Duplicates removed |
7 |
| Duplicated alignments were found at 4 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
343 |
| Methylated C's in CpG context |
19 |
| Methylated C's in CHG context |
17 |
| Methylated C's in CHH context |
98 |
| Unmethylated C's in CpG context |
20 |
| Unmethylated C's in CHG context |
16 |
| Unmethylated C's in CHH context |
173 |
| Percentage methylation (CpG context) |
48.7% |
| Percentage methylation (CHG context) |
51.5% |
| Percentage methylation (CHH context) |
36.2% |
|
|
M-Bias Plot
