Alignment Stats
| Sequences analysed in total |
46792286 |
| Single-end alignments with a unique best hit |
51 |
| Sequences without alignments under any condition |
46792235 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
404 |
| Methylated C's in CpG context |
13 |
| Methylated C's in CHG context |
10 |
| Methylated C's in CHH context |
97 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
25 |
| Unmethylated C's in CHG context |
32 |
| Unmethylated C's in CHH context |
227 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
34.2% |
| Percentage methylation (CHG context) |
23.8% |
| Percentage methylation (CHH context) |
29.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
6 |
original top strand |
| CTOT |
21 |
complementary to original top strand |
| CTOB |
17 |
complementary to original bottom strand |
| OB |
7 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
51 |
| Unique alignments |
38 |
| Duplicates removed |
13 |
| Duplicated alignments were found at 8 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
285 |
| Methylated C's in CpG context |
11 |
| Methylated C's in CHG context |
10 |
| Methylated C's in CHH context |
66 |
| Unmethylated C's in CpG context |
22 |
| Unmethylated C's in CHG context |
30 |
| Unmethylated C's in CHH context |
146 |
| Percentage methylation (CpG context) |
33.3% |
| Percentage methylation (CHG context) |
25.0% |
| Percentage methylation (CHH context) |
31.1% |
|
|
M-Bias Plot
