Alignment Stats
| Sequences analysed in total |
55048106 |
| Single-end alignments with a unique best hit |
53 |
| Sequences without alignments under any condition |
55048053 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
411 |
| Methylated C's in CpG context |
11 |
| Methylated C's in CHG context |
10 |
| Methylated C's in CHH context |
98 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
11 |
| Unmethylated C's in CHG context |
15 |
| Unmethylated C's in CHH context |
266 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
50.0% |
| Percentage methylation (CHG context) |
40.0% |
| Percentage methylation (CHH context) |
26.9% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
7 |
original top strand |
| CTOT |
16 |
complementary to original top strand |
| CTOB |
19 |
complementary to original bottom strand |
| OB |
11 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
53 |
| Unique alignments |
42 |
| Duplicates removed |
11 |
| Duplicated alignments were found at 7 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
308 |
| Methylated C's in CpG context |
11 |
| Methylated C's in CHG context |
10 |
| Methylated C's in CHH context |
85 |
| Unmethylated C's in CpG context |
11 |
| Unmethylated C's in CHG context |
15 |
| Unmethylated C's in CHH context |
176 |
| Percentage methylation (CpG context) |
50.0% |
| Percentage methylation (CHG context) |
40.0% |
| Percentage methylation (CHH context) |
32.6% |
|
|
M-Bias Plot
