zr1394_18_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 42 lines in total Total number of methylation call strings processed: 42 Final Cytosine Methylation Report ================================= Total number of C's analysed: 308 Total methylated C's in CpG context: 11 Total methylated C's in CHG context: 10 Total methylated C's in CHH context: 85 Total C to T conversions in CpG context: 11 Total C to T conversions in CHG context: 15 Total C to T conversions in CHH context: 176 C methylated in CpG context: 50.0% C methylated in CHG context: 40.0% C methylated in CHH context: 32.6%