Alignment Stats
| Sequences analysed in total |
42070546 |
| Single-end alignments with a unique best hit |
58 |
| Sequences without alignments under any condition |
42070488 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
415 |
| Methylated C's in CpG context |
12 |
| Methylated C's in CHG context |
7 |
| Methylated C's in CHH context |
98 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
9 |
| Unmethylated C's in CHG context |
16 |
| Unmethylated C's in CHH context |
273 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
57.1% |
| Percentage methylation (CHG context) |
30.4% |
| Percentage methylation (CHH context) |
26.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
9 |
original top strand |
| CTOT |
12 |
complementary to original top strand |
| CTOB |
21 |
complementary to original bottom strand |
| OB |
16 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
58 |
| Unique alignments |
42 |
| Duplicates removed |
16 |
| Duplicated alignments were found at 5 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
280 |
| Methylated C's in CpG context |
12 |
| Methylated C's in CHG context |
7 |
| Methylated C's in CHH context |
67 |
| Unmethylated C's in CpG context |
8 |
| Unmethylated C's in CHG context |
13 |
| Unmethylated C's in CHH context |
173 |
| Percentage methylation (CpG context) |
60.0% |
| Percentage methylation (CHG context) |
35.0% |
| Percentage methylation (CHH context) |
27.9% |
|
|
M-Bias Plot
