Alignment Stats
| Sequences analysed in total |
74531056 |
| Single-end alignments with a unique best hit |
99 |
| Sequences without alignments under any condition |
74530957 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
800 |
| Methylated C's in CpG context |
24 |
| Methylated C's in CHG context |
27 |
| Methylated C's in CHH context |
204 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
21 |
| Unmethylated C's in CHG context |
25 |
| Unmethylated C's in CHH context |
499 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
53.3% |
| Percentage methylation (CHG context) |
51.9% |
| Percentage methylation (CHH context) |
29.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
12 |
original top strand |
| CTOT |
39 |
complementary to original top strand |
| CTOB |
30 |
complementary to original bottom strand |
| OB |
18 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
99 |
| Unique alignments |
60 |
| Duplicates removed |
39 |
| Duplicated alignments were found at 13 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
442 |
| Methylated C's in CpG context |
24 |
| Methylated C's in CHG context |
25 |
| Methylated C's in CHH context |
134 |
| Unmethylated C's in CpG context |
15 |
| Unmethylated C's in CHG context |
19 |
| Unmethylated C's in CHH context |
225 |
| Percentage methylation (CpG context) |
61.5% |
| Percentage methylation (CHG context) |
56.8% |
| Percentage methylation (CHH context) |
37.3% |
|
|
M-Bias Plot
