Alignment Stats
| Sequences analysed in total |
67984205 |
| Single-end alignments with a unique best hit |
92 |
| Sequences without alignments under any condition |
67984113 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
734 |
| Methylated C's in CpG context |
18 |
| Methylated C's in CHG context |
9 |
| Methylated C's in CHH context |
167 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
25 |
| Unmethylated C's in CHG context |
30 |
| Unmethylated C's in CHH context |
485 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
41.9% |
| Percentage methylation (CHG context) |
23.1% |
| Percentage methylation (CHH context) |
25.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
13 |
original top strand |
| CTOT |
26 |
complementary to original top strand |
| CTOB |
32 |
complementary to original bottom strand |
| OB |
21 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
92 |
| Unique alignments |
55 |
| Duplicates removed |
37 |
| Duplicated alignments were found at 9 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
397 |
| Methylated C's in CpG context |
16 |
| Methylated C's in CHG context |
9 |
| Methylated C's in CHH context |
108 |
| Unmethylated C's in CpG context |
22 |
| Unmethylated C's in CHG context |
23 |
| Unmethylated C's in CHH context |
219 |
| Percentage methylation (CpG context) |
42.1% |
| Percentage methylation (CHG context) |
28.1% |
| Percentage methylation (CHH context) |
33.0% |
|
|
M-Bias Plot
