Alignment Stats
| Sequences analysed in total |
87834637 |
| Single-end alignments with a unique best hit |
96 |
| Sequences without alignments under any condition |
87834541 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
809 |
| Methylated C's in CpG context |
27 |
| Methylated C's in CHG context |
16 |
| Methylated C's in CHH context |
153 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
30 |
| Unmethylated C's in CHG context |
28 |
| Unmethylated C's in CHH context |
555 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
47.4% |
| Percentage methylation (CHG context) |
36.4% |
| Percentage methylation (CHH context) |
21.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
14 |
original top strand |
| CTOT |
37 |
complementary to original top strand |
| CTOB |
28 |
complementary to original bottom strand |
| OB |
17 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
96 |
| Unique alignments |
55 |
| Duplicates removed |
41 |
| Duplicated alignments were found at 11 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
417 |
| Methylated C's in CpG context |
24 |
| Methylated C's in CHG context |
15 |
| Methylated C's in CHH context |
93 |
| Unmethylated C's in CpG context |
24 |
| Unmethylated C's in CHG context |
25 |
| Unmethylated C's in CHH context |
236 |
| Percentage methylation (CpG context) |
50.0% |
| Percentage methylation (CHG context) |
37.5% |
| Percentage methylation (CHH context) |
28.3% |
|
|
M-Bias Plot
