Alignment Stats
| Sequences analysed in total |
64352550 |
| Single-end alignments with a unique best hit |
66 |
| Sequences without alignments under any condition |
64352484 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
513 |
| Methylated C's in CpG context |
17 |
| Methylated C's in CHG context |
8 |
| Methylated C's in CHH context |
126 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
22 |
| Unmethylated C's in CHG context |
23 |
| Unmethylated C's in CHH context |
317 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
43.6% |
| Percentage methylation (CHG context) |
25.8% |
| Percentage methylation (CHH context) |
28.4% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
9 |
original top strand |
| CTOT |
20 |
complementary to original top strand |
| CTOB |
28 |
complementary to original bottom strand |
| OB |
9 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
66 |
| Unique alignments |
44 |
| Duplicates removed |
22 |
| Duplicated alignments were found at 12 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
326 |
| Methylated C's in CpG context |
16 |
| Methylated C's in CHG context |
8 |
| Methylated C's in CHH context |
95 |
| Unmethylated C's in CpG context |
12 |
| Unmethylated C's in CHG context |
16 |
| Unmethylated C's in CHH context |
179 |
| Percentage methylation (CpG context) |
57.1% |
| Percentage methylation (CHG context) |
33.3% |
| Percentage methylation (CHH context) |
34.7% |
|
|
M-Bias Plot
