zr1394_13_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 44 lines in total Total number of methylation call strings processed: 44 Final Cytosine Methylation Report ================================= Total number of C's analysed: 326 Total methylated C's in CpG context: 16 Total methylated C's in CHG context: 8 Total methylated C's in CHH context: 95 Total C to T conversions in CpG context: 12 Total C to T conversions in CHG context: 16 Total C to T conversions in CHH context: 179 C methylated in CpG context: 57.1% C methylated in CHG context: 33.3% C methylated in CHH context: 34.7%