Alignment Stats
| Sequences analysed in total |
59459431 |
| Single-end alignments with a unique best hit |
56 |
| Sequences without alignments under any condition |
59459375 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
406 |
| Methylated C's in CpG context |
16 |
| Methylated C's in CHG context |
6 |
| Methylated C's in CHH context |
99 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
12 |
| Unmethylated C's in CHG context |
18 |
| Unmethylated C's in CHH context |
255 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
57.1% |
| Percentage methylation (CHG context) |
25.0% |
| Percentage methylation (CHH context) |
28.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
6 |
original top strand |
| CTOT |
12 |
complementary to original top strand |
| CTOB |
24 |
complementary to original bottom strand |
| OB |
14 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
56 |
| Unique alignments |
45 |
| Duplicates removed |
11 |
| Duplicated alignments were found at 9 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
323 |
| Methylated C's in CpG context |
13 |
| Methylated C's in CHG context |
6 |
| Methylated C's in CHH context |
75 |
| Unmethylated C's in CpG context |
12 |
| Unmethylated C's in CHG context |
17 |
| Unmethylated C's in CHH context |
200 |
| Percentage methylation (CpG context) |
52.0% |
| Percentage methylation (CHG context) |
26.1% |
| Percentage methylation (CHH context) |
27.3% |
|
|
M-Bias Plot
