Alignment Stats
| Sequences analysed in total |
54458572 |
| Single-end alignments with a unique best hit |
68 |
| Sequences without alignments under any condition |
54458504 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
553 |
| Methylated C's in CpG context |
14 |
| Methylated C's in CHG context |
8 |
| Methylated C's in CHH context |
97 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
20 |
| Unmethylated C's in CHG context |
25 |
| Unmethylated C's in CHH context |
389 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
41.2% |
| Percentage methylation (CHG context) |
24.2% |
| Percentage methylation (CHH context) |
20.0% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
14 |
original top strand |
| CTOT |
11 |
complementary to original top strand |
| CTOB |
28 |
complementary to original bottom strand |
| OB |
15 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
68 |
| Unique alignments |
41 |
| Duplicates removed |
27 |
| Duplicated alignments were found at 10 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
311 |
| Methylated C's in CpG context |
10 |
| Methylated C's in CHG context |
7 |
| Methylated C's in CHH context |
64 |
| Unmethylated C's in CpG context |
17 |
| Unmethylated C's in CHG context |
19 |
| Unmethylated C's in CHH context |
194 |
| Percentage methylation (CpG context) |
37.0% |
| Percentage methylation (CHG context) |
26.9% |
| Percentage methylation (CHH context) |
24.8% |
|
|
M-Bias Plot
