zr1394_11_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 41 lines in total Total number of methylation call strings processed: 41 Final Cytosine Methylation Report ================================= Total number of C's analysed: 311 Total methylated C's in CpG context: 10 Total methylated C's in CHG context: 7 Total methylated C's in CHH context: 64 Total C to T conversions in CpG context: 17 Total C to T conversions in CHG context: 19 Total C to T conversions in CHH context: 194 C methylated in CpG context: 37.0% C methylated in CHG context: 26.9% C methylated in CHH context: 24.8%