Alignment Stats
| Sequences analysed in total |
78221457 |
| Single-end alignments with a unique best hit |
100 |
| Sequences without alignments under any condition |
78221357 |
| Sequences that did not map uniquely |
0 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
722 |
| Methylated C's in CpG context |
40 |
| Methylated C's in CHG context |
25 |
| Methylated C's in CHH context |
190 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
42 |
| Unmethylated C's in CHG context |
32 |
| Unmethylated C's in CHH context |
393 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
48.8% |
| Percentage methylation (CHG context) |
43.9% |
| Percentage methylation (CHH context) |
32.6% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
16 |
original top strand |
| CTOT |
34 |
complementary to original top strand |
| CTOB |
35 |
complementary to original bottom strand |
| OB |
15 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
100 |
| Unique alignments |
64 |
| Duplicates removed |
36 |
| Duplicated alignments were found at 19 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
442 |
| Methylated C's in CpG context |
33 |
| Methylated C's in CHG context |
22 |
| Methylated C's in CHH context |
130 |
| Unmethylated C's in CpG context |
24 |
| Unmethylated C's in CHG context |
23 |
| Unmethylated C's in CHH context |
210 |
| Percentage methylation (CpG context) |
57.9% |
| Percentage methylation (CHG context) |
48.9% |
| Percentage methylation (CHH context) |
38.2% |
|
|
M-Bias Plot
