File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr1394_10_s456_trimmed_bismark_bt2.bam	78221457	100	78221357	0	0	36	64	442	33	24	22	23	130	210
zr1394_11_s456_trimmed_bismark_bt2.bam	54458572	68	54458504	0	0	27	41	311	10	17	7	19	64	194
zr1394_12_s456_trimmed_bismark_bt2.bam	59459431	56	59459375	0	0	11	45	323	13	12	6	17	75	200
zr1394_13_s456_trimmed_bismark_bt2.bam	64352550	66	64352484	0	0	22	44	326	16	12	8	16	95	179
zr1394_14_s456_trimmed_bismark_bt2.bam	87834637	96	87834541	0	0	41	55	417	24	24	15	25	93	236
zr1394_15_s456_trimmed_bismark_bt2.bam	67984205	92	67984113	0	0	37	55	397	16	22	9	23	108	219
zr1394_16_s456_trimmed_bismark_bt2.bam	74531056	99	74530957	0	0	39	60	442	24	15	25	19	134	225
zr1394_17_s456_trimmed_bismark_bt2.bam	42070546	58	42070488	0	0	16	42	280	12	8	7	13	67	173
zr1394_18_s456_trimmed_bismark_bt2.bam	55048106	53	55048053	0	0	11	42	308	11	11	10	15	85	176
zr1394_1_s456_trimmed_bismark_bt2.bam	46792286	51	46792235	0	0	13	38	285	11	22	10	30	66	146
zr1394_2_s456_trimmed_bismark_bt2.bam	46105140	55	46105085	0	0	7	48	343	19	20	17	16	98	173
zr1394_3_s456_trimmed_bismark_bt2.bam	48376729	59	48376670	0	0	7	52	378	14	24	22	17	111	190
zr1394_4_s456_trimmed_bismark_bt2.bam	44905078	70	44905008	0	0	23	47	347	12	19	9	14	80	213
zr1394_5_s456_trimmed_bismark_bt2.bam	47401736	64	47401672	0	0	11	53	394	21	12	24	15	133	189
zr1394_6_s456_trimmed_bismark_bt2.bam	46455148	49	46455099	0	0	10	39	289	26	13	19	14	82	135
zr1394_7_s456_trimmed_bismark_bt2.bam	49730113	52	49730061	0	0	9	43	320	9	16	6	13	71	205
zr1394_8_s456_trimmed_bismark_bt2.bam	38697189	33	38697156	0	0	5	28	195	8	5	7	9	45	121
zr1394_9_s456_trimmed_bismark_bt2.bam	77350922	74	77350848	0	0	16	58	448	19	30	15	21	95	268
zr1394_all_s456_trimmed_bismark_bt2.bam	605809374	713	605808661	0	0	407	306	2096	142	96	107	144	580	1027