Alignment Stats
| Sequences analysed in total |
605809374 |
| Single-end alignments with a unique best hit |
7659 |
| Sequences without alignments under any condition |
605801586 |
| Sequences that did not map uniquely |
129 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
56435 |
| Methylated C's in CpG context |
4281 |
| Methylated C's in CHG context |
995 |
| Methylated C's in CHH context |
7649 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
3045 |
| Unmethylated C's in CHG context |
5999 |
| Unmethylated C's in CHH context |
34466 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
58.4% |
| Percentage methylation (CHG context) |
14.2% |
| Percentage methylation (CHH context) |
18.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
1008 |
original top strand |
| CTOT |
1303 |
complementary to original top strand |
| CTOB |
3078 |
complementary to original bottom strand |
| OB |
2270 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
7659 |
| Unique alignments |
2424 |
| Duplicates removed |
5235 |
| Duplicated alignments were found at 788 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
16875 |
| Methylated C's in CpG context |
782 |
| Methylated C's in CHG context |
404 |
| Methylated C's in CHH context |
3040 |
| Unmethylated C's in CpG context |
1132 |
| Unmethylated C's in CHG context |
1965 |
| Unmethylated C's in CHH context |
9552 |
| Percentage methylation (CpG context) |
40.9% |
| Percentage methylation (CHG context) |
17.1% |
| Percentage methylation (CHH context) |
24.1% |
|
|
M-Bias Plot
