zr1394_all_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 2424 lines in total Total number of methylation call strings processed: 2424 Final Cytosine Methylation Report ================================= Total number of C's analysed: 16875 Total methylated C's in CpG context: 782 Total methylated C's in CHG context: 404 Total methylated C's in CHH context: 3040 Total C to T conversions in CpG context: 1132 Total C to T conversions in CHG context: 1965 Total C to T conversions in CHH context: 9552 C methylated in CpG context: 40.9% C methylated in CHG context: 17.1% C methylated in CHH context: 24.1%