Alignment Stats
| Sequences analysed in total |
77350922 |
| Single-end alignments with a unique best hit |
843 |
| Sequences without alignments under any condition |
77350061 |
| Sequences that did not map uniquely |
18 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
5974 |
| Methylated C's in CpG context |
307 |
| Methylated C's in CHG context |
105 |
| Methylated C's in CHH context |
924 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
368 |
| Unmethylated C's in CHG context |
609 |
| Unmethylated C's in CHH context |
3661 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
45.5% |
| Percentage methylation (CHG context) |
14.7% |
| Percentage methylation (CHH context) |
20.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
144 |
original top strand |
| CTOT |
152 |
complementary to original top strand |
| CTOB |
311 |
complementary to original bottom strand |
| OB |
236 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
843 |
| Unique alignments |
504 |
| Duplicates removed |
339 |
| Duplicated alignments were found at 117 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
3665 |
| Methylated C's in CpG context |
134 |
| Methylated C's in CHG context |
71 |
| Methylated C's in CHH context |
647 |
| Unmethylated C's in CpG context |
248 |
| Unmethylated C's in CHG context |
385 |
| Unmethylated C's in CHH context |
2180 |
| Percentage methylation (CpG context) |
35.1% |
| Percentage methylation (CHG context) |
15.6% |
| Percentage methylation (CHH context) |
22.9% |
|
|
M-Bias Plot
