Alignment Stats
| Sequences analysed in total |
38697189 |
| Single-end alignments with a unique best hit |
494 |
| Sequences without alignments under any condition |
38696681 |
| Sequences that did not map uniquely |
14 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
3546 |
| Methylated C's in CpG context |
212 |
| Methylated C's in CHG context |
68 |
| Methylated C's in CHH context |
553 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
198 |
| Unmethylated C's in CHG context |
330 |
| Unmethylated C's in CHH context |
2185 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
51.7% |
| Percentage methylation (CHG context) |
17.1% |
| Percentage methylation (CHH context) |
20.2% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
78 |
original top strand |
| CTOT |
88 |
complementary to original top strand |
| CTOB |
203 |
complementary to original bottom strand |
| OB |
125 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
494 |
| Unique alignments |
312 |
| Duplicates removed |
182 |
| Duplicated alignments were found at 56 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2240 |
| Methylated C's in CpG context |
78 |
| Methylated C's in CHG context |
46 |
| Methylated C's in CHH context |
441 |
| Unmethylated C's in CpG context |
131 |
| Unmethylated C's in CHG context |
202 |
| Unmethylated C's in CHH context |
1342 |
| Percentage methylation (CpG context) |
37.3% |
| Percentage methylation (CHG context) |
18.5% |
| Percentage methylation (CHH context) |
24.7% |
|
|
M-Bias Plot
