zr1394_8_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 312 lines in total Total number of methylation call strings processed: 312 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2240 Total methylated C's in CpG context: 78 Total methylated C's in CHG context: 46 Total methylated C's in CHH context: 441 Total C to T conversions in CpG context: 131 Total C to T conversions in CHG context: 202 Total C to T conversions in CHH context: 1342 C methylated in CpG context: 37.3% C methylated in CHG context: 18.5% C methylated in CHH context: 24.7%