Alignment Stats
| Sequences analysed in total |
49730113 |
| Single-end alignments with a unique best hit |
659 |
| Sequences without alignments under any condition |
49729438 |
| Sequences that did not map uniquely |
16 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4800 |
| Methylated C's in CpG context |
311 |
| Methylated C's in CHG context |
71 |
| Methylated C's in CHH context |
670 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
317 |
| Unmethylated C's in CHG context |
538 |
| Unmethylated C's in CHH context |
2893 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
49.5% |
| Percentage methylation (CHG context) |
11.7% |
| Percentage methylation (CHH context) |
18.8% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
116 |
original top strand |
| CTOT |
94 |
complementary to original top strand |
| CTOB |
262 |
complementary to original bottom strand |
| OB |
187 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
659 |
| Unique alignments |
390 |
| Duplicates removed |
269 |
| Duplicated alignments were found at 72 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2860 |
| Methylated C's in CpG context |
134 |
| Methylated C's in CHG context |
50 |
| Methylated C's in CHH context |
467 |
| Unmethylated C's in CpG context |
201 |
| Unmethylated C's in CHG context |
336 |
| Unmethylated C's in CHH context |
1672 |
| Percentage methylation (CpG context) |
40.0% |
| Percentage methylation (CHG context) |
13.0% |
| Percentage methylation (CHH context) |
21.8% |
|
|
M-Bias Plot
