zr1394_7_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 390 lines in total Total number of methylation call strings processed: 390 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2860 Total methylated C's in CpG context: 134 Total methylated C's in CHG context: 50 Total methylated C's in CHH context: 467 Total C to T conversions in CpG context: 201 Total C to T conversions in CHG context: 336 Total C to T conversions in CHH context: 1672 C methylated in CpG context: 40.0% C methylated in CHG context: 13.0% C methylated in CHH context: 21.8%