Alignment Stats
| Sequences analysed in total |
46455148 |
| Single-end alignments with a unique best hit |
607 |
| Sequences without alignments under any condition |
46454530 |
| Sequences that did not map uniquely |
11 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4368 |
| Methylated C's in CpG context |
220 |
| Methylated C's in CHG context |
123 |
| Methylated C's in CHH context |
672 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
301 |
| Unmethylated C's in CHG context |
453 |
| Unmethylated C's in CHH context |
2599 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
42.2% |
| Percentage methylation (CHG context) |
21.4% |
| Percentage methylation (CHH context) |
20.5% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
119 |
original top strand |
| CTOT |
98 |
complementary to original top strand |
| CTOB |
220 |
complementary to original bottom strand |
| OB |
170 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
607 |
| Unique alignments |
372 |
| Duplicates removed |
235 |
| Duplicated alignments were found at 83 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2748 |
| Methylated C's in CpG context |
105 |
| Methylated C's in CHG context |
60 |
| Methylated C's in CHH context |
450 |
| Unmethylated C's in CpG context |
186 |
| Unmethylated C's in CHG context |
319 |
| Unmethylated C's in CHH context |
1628 |
| Percentage methylation (CpG context) |
36.1% |
| Percentage methylation (CHG context) |
15.8% |
| Percentage methylation (CHH context) |
21.7% |
|
|
M-Bias Plot
