zr1394_6_s456_trimmed_bismark_bt2.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.21.0 Bismark result file: single-end (SAM format) Output specified: strand-specific (default) Processed 372 lines in total Total number of methylation call strings processed: 372 Final Cytosine Methylation Report ================================= Total number of C's analysed: 2748 Total methylated C's in CpG context: 105 Total methylated C's in CHG context: 60 Total methylated C's in CHH context: 450 Total C to T conversions in CpG context: 186 Total C to T conversions in CHG context: 319 Total C to T conversions in CHH context: 1628 C methylated in CpG context: 36.1% C methylated in CHG context: 15.8% C methylated in CHH context: 21.7%