Alignment Stats
| Sequences analysed in total |
47401736 |
| Single-end alignments with a unique best hit |
607 |
| Sequences without alignments under any condition |
47401115 |
| Sequences that did not map uniquely |
14 |
| Genomic sequence context not extractable (edges of chromosomes) |
0 |
|
|
Cytosine Methylation
| Total C's analysed |
4306 |
| Methylated C's in CpG context |
204 |
| Methylated C's in CHG context |
100 |
| Methylated C's in CHH context |
733 |
| Methylated C's in Unknown context |
0 |
| Unmethylated C's in CpG context |
275 |
| Unmethylated C's in CHG context |
440 |
| Unmethylated C's in CHH context |
2554 |
| Unmethylated C's in Unknown context |
0 |
| Percentage methylation (CpG context) |
42.6% |
| Percentage methylation (CHG context) |
18.5% |
| Percentage methylation (CHH context) |
22.3% |
| Methylated C's in Unknown context |
N/A% |
|
|
Alignment to Individual Bisulfite Strands
| OT |
110 |
original top strand |
| CTOT |
113 |
complementary to original top strand |
| CTOB |
232 |
complementary to original bottom strand |
| OB |
152 |
original bottom strand |
|
|
Deduplication
| Alignments analysed |
607 |
| Unique alignments |
395 |
| Duplicates removed |
212 |
| Duplicated alignments were found at 81 different positions |
|
|
Cytosine Methylation after Extraction
| Total C's analysed |
2833 |
| Methylated C's in CpG context |
102 |
| Methylated C's in CHG context |
60 |
| Methylated C's in CHH context |
538 |
| Unmethylated C's in CpG context |
177 |
| Unmethylated C's in CHG context |
300 |
| Unmethylated C's in CHH context |
1656 |
| Percentage methylation (CpG context) |
36.6% |
| Percentage methylation (CHG context) |
16.7% |
| Percentage methylation (CHH context) |
24.5% |
|
|
M-Bias Plot
